BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922676

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:422636...   521    1e-147


> AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226362-4229138 
REVERSE LENGTH=1858
Length=1858

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 349/382 (91%), Gaps = 1/382 (0%)
 Strand=Plus/Plus

Query  1    GAATCGCTTTACTATCTGAGATGTTTGCCGTCCTCTCTGATCTAAATTGTGATGTTGTTG  60
            |||||| ||||||||||||||||||||| || ||||||||||| || |||||||| ||||
Sbjct  589  GAATCGGTTTACTATCTGAGATGTTTGCGGTTCTCTCTGATCTCAACTGTGATGTGGTTG  648

Query  61   ACGCTAAGCTATGGACACATAATGGTAGAGTTGCTTATGTGATCTATCTCATAGATGGTA  120
            |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||
Sbjct  649  ACGCTAAGCTATGGACACATAACGGTAGAGTTGCTTCTGTGATCTATCTCAAAGATTGTA  708

Query  121  GCTCAGGAGCTCCGATTCTTGATTCTCAGCGGATATCCAAGATCGAAGGATGGTTAAAGA  180
             |||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||
Sbjct  709  TCTCAGGAGCTCCGATTCTCGATTCTCACCGGATATCAAAGATCGAAGGACGGTTAAAGA  768

Query  181  ACGTTTTGAATGTTGATAACGATGTTAACTCCGCTGCAAAGACTTGTGTTTCTATGGATT  240
            ||||||||||||  ||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct  769  ACGTTTTGAATGGCGATAACGATGTTAACTCTGCTGCAAAGACTTGTGTTACTGTGGATT  828

Query  241  CAATGATGCACATAGAACATAGACTTCATCAGCTTATGTTTGAAGATAGAGACTACGAGA  300
            | |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  829  CGATGATGCATATCGAACGTAGACTTCATCAGCTTATGTTTGAAGATAGAGACTACGAGA  888

Query  301  GGAGATCCGATAAACCGGAGAGATCTGCAATGGTGGTTGTGATTGGTTCAGAATTGGGCT  360
            |||||||  | ||||  ||||||||| |||||||||||||||  ||||||||||||||||
Sbjct  889  GGAGATCTAAGAAACATGAGAGATCTCCAATGGTGGTTGTGAC-GGTTCAGAATTGGGCT  947

Query  361  GAGATGGGTTACTCTGTCGTTA  382
            |||| |||||||||||||||||
Sbjct  948  GAGAGGGGTTACTCTGTCGTTA  969



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5