BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922684

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34560.1 | Symbols:  | Protein of unknown function (DUF1184)...   213    2e-54
  AT1G35365.1 | Symbols:  | Protein of unknown function (DUF1184)...   113    2e-24


> AT1G34560.1 | Symbols:  | Protein of unknown function (DUF1184) 
| chr1:12653961-12654677 FORWARD LENGTH=543
Length=543

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 243/304 (80%), Gaps = 12/304 (4%)
 Strand=Plus/Plus

Query  363  ATGC-TA-TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGATG  420
            |||| || |||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct  176  ATGCATACTATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATAAGGATGGTG  235

Query  421  GCAAATCAA-CTCAATTGGAGCTGATCAAATCGTCTACCGAGCA-TTTTGCTTACGGAGT  478
            |||| || | | |||| ||| | | ||||| ||| | || | || |||| |||  |||||
Sbjct  236  GCAAGTCGAGC-CAATGGGAACAGTTCAAAACGTTTTCCTATCAATTTT-CTTTTGGAGT  293

Query  479  CAGGAATTT-GGAGCGCATTATTTTGGTTCTCAATAAT-GGTGGCCTAATGCCACAGTCT  536
            ||| | ||| ||  |||||| |||   ||||  | ||| |||||| || ||  || ||||
Sbjct  294  CAG-AGTTTTGGCTCGCATTGTTTCAATTCTTGA-AATCGGTGGCTTAGTGAAACCGTCT  351

Query  537  GATTTTGAACACTTCAACAAAGAGCTGAAGAAGCTAGAGGAGAAGTTCAGGTCT-TCCAA  595
            | |||| |||||| |||| ||||||| ||||||||||||||| | || || ||| || ||
Sbjct  352  GGTTTTAAACACTACAACCAAGAGCTTAAGAAGCTAGAGGAGCATTTGAGATCTGTC-AA  410

Query  596  AGATGTTTCAGAGGCGAATGGATTTGCGAGAGATGCGATAAAGTCTAACATTCTTCATTT  655
             ||||| || ||||||||||| ||||||||||| || ||| |||||| |||| |||| ||
Sbjct  411  GGATGTATCGGAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTAGCATTTTTCACTT  470

Query  656  GTGG  659
            ||||
Sbjct  471  GTGG  474


> AT1G35365.1 | Symbols:  | Protein of unknown function (DUF1184) 
| chr1:12991392-12992145 FORWARD LENGTH=540
Length=540

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 134/169 (79%), Gaps = 6/169 (4%)
 Strand=Plus/Plus

Query  623  GAGAGATGCGATAAAGTCTAACATTCTTCATTTGTGGGCAAGGAAGTCACC-AGT-ACCA  680
            ||| |||| ||||||||||||||||||||||||||||  |||    ||    |   ||||
Sbjct  375  GAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGG--AAGTCTCTCTTTGAAACACCA  432

Query  681  CTCAAAATAATAAACGCTCCGATTAGAATTGCT-GAGATGTTTAGGCCTCTCTTGAACCA  739
             ||||  | ||| || ||  | ||||||| ||| |||||||| | |||||| ||||||||
Sbjct  433  ATCAAGTTGATATACCCTGAGGTTAGAAT-GCTTGAGATGTTCAAGCCTCTGTTGAACCA  491

Query  740  AGCAAGGGTGCGTATTTGCTCTTGTCTTATTGCTTCTTTACACATATGA  788
            | |||||| | ||||||||||| |||||||||| |||||| ||||||||
Sbjct  492  ATCAAGGGAGAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39333337101


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5