BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922689
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)... 809 0.0
AT1G34560.1 | Symbols: | Protein of unknown function (DUF1184)... 193 3e-48
> AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)
| chr3:10352905-10353639 REVERSE LENGTH=735
Length=735
Score = 809 bits (438), Expect = 0.0
Identities = 647/745 (87%), Gaps = 26/745 (3%)
Strand=Plus/Plus
Query 21 ATGGAATCTATGTCACTGAGTCACCGTG-T-TGCG---C-GTCACAACAAGAAATTACAA 74
||||||||||||||| ||| |||||||| | |||| | ||||||||||||||||||||
Sbjct 1 ATGGAATCTATGTCAATGAATCACCGTGTTGTGCGTCACTGTCACAACAAGAAATTACAA 60
Query 75 AAGTCTAGATATTCTCCTTACAGTAAAGAGACTA--A-CATTATCATTGAGAAGGAGATG 131
|||||||||||||||| ||||||||||||| || | || || ||||||||||||||||
Sbjct 61 CAGTCTAGATATTCTCCGTACAGTAAAGAGAATATCATCAGTACCATTGAGAAGGAGATG 120
Query 132 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGTTCTCGCTCTTTGTGGCTGAAGCAATG 191
||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 121 CAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAACAATG 180
Query 192 GTCTTATTATCTGATGACATACGTTCTATGTTACTGTTCTGTCTTTGGCTACTGAAGGAT 251
|||||||||||||| || ||||||||||||||||||||||||||||| || ||| | ||
Sbjct 181 GTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTCTTTGGGTATTGACGAAT 240
Query 252 GCAG-GAAAAGGTATT--ACCGCTCCCGTGGTAGGAAGGCTG-ATTTTTGTTACGATATA 307
|||| | | |||| |||| |||||||||||||||| || ||| | |||| | ||||
Sbjct 241 GCAGAGTGCACATATTTCACCGATCCCGTGGTAGGAAGGTTGCATTGT-GTTATGCTATA 299
Query 308 TGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGGTGGCAAATCGAA 367
|||||| ||||||||||||||||| |||||||| ||||||| ||||| || |||||||||
Sbjct 300 TGTGTTAGAAACATATATCAAACCTAAGAATGGTGTCTATCTGGCTGATGTCAAATCGAA 359
Query 368 ACAATGGGAACTTATCGTAAACTCTAGCCAGAATTTTGTTTTTGGAATCGGAGAATTGGA 427
||||||||| || ||||||| ||| || ||| |||||||||||||||| ||||||||||
Sbjct 360 CCAATGGGAAGTTTTCGTAAAGTCTTGCAAGAGTTTTGTTTTTGGAATCAGAGAATTGGA 419
Query 428 TCGCATTGTTTTGATTCTTAGGAA-GAGAGAAAGCTCTT-TTGGTGAGTTAGTGAAAACA 485
||||||||| |||||||| |||| |||||||||||||| ||| |||| ||||||||||
Sbjct 420 TCGCATTGTATTGATTCTC-GGAAAGAGAGAAAGCTCTTCTTG-TGAGGTAGTGAAAACG 477
Query 486 TCGGATTTTGAACACTACAACCAAGAGCTGAAAAAGCTAGAGGAGACGTTGAGGTCTGCC 545
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TCTGATTTTGAACACTGTAACCAAGAGCTGAAGAAGCTAGAGGAGACGTTGAGGTCTGCC 537
Query 546 AAAAATGTTTCAGAGGCGTATGGATTTTCGAGAGAAGCGATAAAGTCTAACATTCTTTAT 605
||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||| |
Sbjct 538 AAAGATGTTTCAGAAGCGAATGGATTCGCGAGAGAAGTGATAAAGTCTAACATACTTTGT 597
Query 606 TTGTGGAAGCCTCTCTTTGAAACCTCACCACCTAAGGTGAAAGTGATCAACCCTAAAAAT 665
||||||||| ||||||||||||| |||| ||| ||||||| | | |||| ||| |||
Sbjct 598 TTGTGGAAGTCTCTCTTTGAAACATCACAACCCAAGGTGA---T-A--AACCTTAAGAAT 651
Query 666 AGAATTCTTGAGATGTTTAAGCCTCTCTTGATCCAAGCCAGGGAGGATG-CTTGCTCTCG 724
|||| |||||| ||||||||||||||||||| |||||| |||||| || |||||||| |
Sbjct 652 AGAACTCTTGATATGTTTAAGCCTCTCTTGAACCAAGCAAGGGAG-ATTACTTGCTCTAG 710
Query 725 TCTTATTGCTTCTTTACATATATGA 749
|||||||||||| ||||| ||||||
Sbjct 711 TCTTATTGCTTCATTACACATATGA 735
> AT1G34560.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:12653961-12654677 FORWARD LENGTH=543
Length=543
Score = 193 bits (104), Expect = 3e-48
Identities = 262/333 (79%), Gaps = 32/333 (10%)
Strand=Plus/Plus
Query 303 ATA-TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGGTGGCAA 361
||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 180 ATACTATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATAAGGATGGTGGCAA 239
Query 362 ATCGAAACAATGGGAACT-TATCGTAAAC-TCTAGCC-AG-AATTTTGTTTTTGGAATCG 417
|||| |||||||||| | || |||| | | || | |||||| |||| ||| ||
Sbjct 240 GTCGAGCCAATGGGAACAGT-TCA-AAACGTTTT-CCTATCAATTTTCTTTT-GGAGTCA 295
Query 418 GAGAATTGGATCGCATTGTTTTGATTCTTAGGAAGAGAGAAAGCTCTTTTGGTGAG-TTA 476
||| |||| ||||||||||| |||||| | || | || |||| | |||
Sbjct 296 GAGTTTTGGCTCGCATTGTTTCAATTCTT-G-AA-A--------TC----GGTG-GCTTA 339
Query 477 GTGAAAACATC-GGATTTTGAACACTACAACCAAGAGCTGAAAAAGCTAGAGGAGACGTT 535
|||||| | || || |||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct 340 GTGAAACCGTCTGG-TTTTAAACACTACAACCAAGAGCTTAAGAAGCTAGAGGAG-CATT 397
Query 536 -GAGGTCTGCCAAAAATGTTTCAGAGGCGTATGGATTTTCGAGAGAAGCGATAAAGTCTA 594
||| |||| ||| |||| || |||||| |||| ||| |||||||||| ||| ||||||
Sbjct 398 TGAGATCTGTCAAGGATGTATCGGAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTA 457
Query 595 ACATTCTTT-ATTTGTGGAAGCCTCTCTTTGAA 626
|||| ||| | ||||||||| |||| ||||||
Sbjct 458 GCATT-TTTCACTTGTGGAAGTCTCTGTTTGAA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5