BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922690

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35350.1 | Symbols:  | EXS (ERD1/XPR1/SYG1) family protein |...   344    4e-94
  AT1G26730.1 | Symbols:  | EXS (ERD1/XPR1/SYG1) family protein |...   291    6e-78


> AT1G35350.1 | Symbols:  | EXS (ERD1/XPR1/SYG1) family protein 
| chr1:12981251-12984583 REVERSE LENGTH=2256
Length=2256

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 222/239 (93%), Gaps = 4/239 (2%)
 Strand=Plus/Plus

Query  12    TGATCATGTATGCTTCAAACATATACTTTTGGAAGTGATCGATATCGAGTGAATTACCCG  71
             ||||||||||||||||||||||||||||||||||| |   | ||||||||||||||||||
Sbjct  1211  TGATCATGTATGCTTCAAACATATACTTTTGGAAGCG---G-TATCGAGTGAATTACCCG  1266

Query  72    TTCATATTTGAATTCAAAGAAGGAACAGAGCTTGGTTACGGACATGTTCTGCTTCTAAGC  131
             || ||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  1267  TTTATATTCGGATTCAAAGAAGGAACAGAACTTGGTTATGGACATGTTCTGCTTCTAAGC  1326

Query  132   TTTGGCCTCGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACCTGGATATGGAGATGGAT  191
             |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  1327  TTTGGCCTTGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACATGGACATGGAGATGGAT  1386

Query  192   CCTAATACTAATGACTACAAGACCATCACTGAACTTGTTCCCCTTTTTGGTATAGCGCT  250
             |||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||
Sbjct  1387  CCTAATACTAATGATTACAAGACCATCACTGAACTTGTTCCCCTTTTTGTTGTCGCGCT  1445


> AT1G26730.1 | Symbols:  | EXS (ERD1/XPR1/SYG1) family protein 
| chr1:9241435-9244650 FORWARD LENGTH=2253
Length=2253

 Score =  291 bits (157),  Expect = 6e-78
 Identities = 201/222 (91%), Gaps = 4/222 (2%)
 Strand=Plus/Plus

Query  12    TGATCATGTATGCTTCAAACATATACTTTTGGAAGTGATCGATATCGAGTGAATTACCCG  71
             |||||||||||||||||||||||||||||||||||    ||||||||||||||||| |||
Sbjct  1208  TGATCATGTATGCTTCAAACATATACTTTTGGAAG----CGATATCGAGTGAATTATCCG  1263

Query  72    TTCATATTTGAATTCAAAGAAGGAACAGAGCTTGGTTACGGACATGTTCTGCTTCTAAGC  131
             || ||||| |  || |||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  1264  TTTATATTCGGTTTTAAAGAAGGAACAGAGCTTGGTTATAGACATGTTCTGCTTCTAAGC  1323

Query  132   TTTGGCCTCGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACCTGGATATGGAGATGGAT  191
             ||||| |||||||||||||||||||||||||||||| | ||||| || ||||||||||||
Sbjct  1324  TTTGGTCTCGGCACGCTTGCTCTCTGCGCTGTTCTAATAAACCTTGACATGGAGATGGAT  1383

Query  192   CCTAATACTAATGACTACAAGACCATCACTGAACTTGTTCCC  233
             ||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct  1384  CCTAACACTAATGACTACAAAACCATGACTGAACTTCTTCCC  1425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5