BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922694
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)... 300 2e-80
AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)... 278 8e-74
> AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:12991392-12992145 FORWARD LENGTH=540
Length=540
Score = 300 bits (162), Expect = 2e-80
Identities = 216/242 (89%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 75 ATGGAATCAATGTCAATGACTCACCATGTTGTCCGTAACAACAAGAGATTACCACAGTCT 134
|||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACAGTCT 60
Query 135 AGATATTCTCCTTACATTTTAGGGTCAGTGA-TCGCTACTATTCCTAACACTAAAGAGAC 193
||||||||||||||||||||| |||||| | | ||||||||| ||||| |||| ||||
Sbjct 61 AGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGAC 119
Query 194 TAATCTTACCAATGAGAAACAGAAAGATGAGGCTG-AGCGACTCGGAGTTGAGCTCTCGG 252
||||||||||| |||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct 120 TAATCTTACCATTGAGAAGCAGAAAGAGGAGGCTATA-CGACTCGGAGTTGAGCTCTCAC 178
Query 253 TATTTGTGGCTGAAGCAATGTTCTTATTATCTGATGACCTACGTTCTATGTTACACTTCT 312
| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238
Query 313 GT 314
||
Sbjct 239 GT 240
Score = 150 bits (81), Expect = 2e-35
Identities = 141/169 (83%), Gaps = 7/169 (4%)
Strand=Plus/Plus
Query 658 TGAGAGAAGCGATGAAGTCTAACATTCTTCATTTGTGGAAGTCTCTATTTGTAACA-CTA 716
|||| || | ||| |||||||||||||||||||||||||||||||| |||| |||| | |
Sbjct 374 TGAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGGAAGTCTCTCTTTGAAACACCAA 433
Query 717 -C-CCTTGATATTCCCTAG-GGTTAGAATTCATGATATGTTTAGGCCTCTCTTGAACCAA 773
| ||||||| |||| | ||||||||| | ||| ||||| | |||||| |||||||||
Sbjct 434 TCAAGTTGATATACCCT-GAGGTTAGAATGCTTGAGATGTTCAAGCCTCTGTTGAACCAA 492
Query 774 GCAAGGCAGGA-TGTTTGCTCTCGTCTTATTGCTTCTTTACACATATGA 821
||||| | || | ||||||||||||||||||| |||||| ||||||||
Sbjct 493 TCAAGGGA-GAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA 540
> AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)
| chr3:10352905-10353639 REVERSE LENGTH=735
Length=735
Score = 278 bits (150), Expect = 8e-74
Identities = 488/642 (76%), Gaps = 60/642 (9%)
Strand=Plus/Plus
Query 213 CAGAAAGATGAGGCTGA-GCGACTCGGAGTTGAGCTCTCGGTATTTGTGGCTGAAGCAAT 271
||||||||||||||| | ||| | ||||||||||||||| | |||||||||||| ||||
Sbjct 121 CAGAAAGATGAGGCT-ATACGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAACAAT 179
Query 272 GTTCTTATTATCTGATGACCTACGTTCTATGTTACACTTCTGTGTTCAGATAATATTGAA 331
| ||||||||||||| |||||||||||||||||| |||||| || | ||||||
Sbjct 180 GGTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTCTT-TG--GGTATTGAC 236
Query 332 GTATATTATTACTAG-GAACAAAGAAAAGAAGAATCCCACCCAAGTGGTAAAAATACTG- 389
| | | | | || | ||| | | | || ||| |||||| || ||
Sbjct 237 G-A-A-T-GCA-GAGTGCACATATTTCA-CCG-AT----CCC--GTGGTAGGAAGGTTGC 283
Query 390 ATTTATGTCATGCTATATGTGTTTGAAACATATATCAAACCAAAGAATGGAGTGTATCAG 449
| || ||| |||||||||||||| ||||||||||||||||| |||||||| || |||| |
Sbjct 284 A-TTGTGTTATGCTATATGTGTTAGAAACATATATCAAACCTAAGAATGGTGTCTATCTG 342
Query 450 GCTGATGGCAAATC-CACCAAATTGGATCTGATC--AAATCGTCTACCCAGCA-TTTTGC 505
||||||| |||||| ||| ||| ||| | || ||| |||| | || | |||||
Sbjct 343 GCTGATGTCAAATCGAACC-AATGGGAAGTTTTCGTAAA--GTCTTGCAAG-AGTTTTGT 398
Query 506 TTACGGGATCAGGAG-TTTGGAGCACATTGTTTTGGTTCTC-GAAA-ATG-G--CG-GC- 557
|| || |||| ||| ||||| | |||||| ||| ||||| |||| | | | | |
Sbjct 399 TTTTGGAATCA-GAGAATTGGATCGCATTGTATTGATTCTCGGAAAGA-GAGAAAGCTCT 456
Query 558 TC--------TA-TGCCACCGAT-TTATTTTGAACACTACAACCAAGAGCTGAAGAAGCT 607
|| || || | || | | |||||||||||| ||||||||||||||||||||
Sbjct 457 TCTTGTGAGGTAGTGAAAACG-TCTGATTTTGAACACTGTAACCAAGAGCTGAAGAAGCT 515
Query 608 AGAGGAGAAGTTGAGGTCTTCCAAAGATGTTTTAGAGGCGAATGGTTTTGTGAGAGAAGC 667
|||||||| |||||||||| |||||||||||| ||| |||||||| || | ||||||||
Sbjct 516 AGAGGAGACGTTGAGGTCTGCCAAAGATGTTTCAGAAGCGAATGGATTCGCGAGAGAAGT 575
Query 668 GATGAAGTCTAACATTCTTCATTTGTGGAAGTCTCTATTTGTAACA-CT-A-CCCT---T 721
||| ||||||||||| ||| ||||||||||||||| |||| |||| | | ||| |
Sbjct 576 GATAAAGTCTAACATACTTTGTTTGTGGAAGTCTCTCTTTGAAACATCACAACCCAAGGT 635
Query 722 GATATTCCCTAGGGTTAGAATTCATGATATGTTTAGGCCTCTCTTGAACCAAGCAAGGCA 781
|||| || || | ||||| || ||||||||||| |||||||||||||||||||||| |
Sbjct 636 GATAAACCTTAAGAATAGAACTCTTGATATGTTTAAGCCTCTCTTGAACCAAGCAAGGGA 695
Query 782 GGATGT--TTGCTCTCGTCTTATTGCTTCTTTACACATATGA 821
| || | ||||||| ||||||||||||| ||||||||||||
Sbjct 696 G-AT-TACTTGCTCTAGTCTTATTGCTTCATTACACATATGA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5