BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922711
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1199 0.0
AT5G59630.1 | Symbols: | pseudogene, glycine-rich protein, bl... 198 6e-50
AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 | chr5:124... 152 5e-36
AT3G42310.1 | Symbols: | unknown protein; Has 66 Blast hits to... 145 8e-34
> AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13039916-13042102 FORWARD
LENGTH=1151
Length=1151
Score = 1199 bits (649), Expect = 0.0
Identities = 774/830 (93%), Gaps = 26/830 (3%)
Strand=Plus/Plus
Query 1 CATTCTCCGGTGAACAACTCGATGCAATCCACTCATATCAGCGGCGGAAGTAGCGGCggt 60
|||||||||||| | | | ||||||||||||||||||| ||||||||||||| |||||
Sbjct 156 CATTCTCCGGTGGAGACCCCGATGCAATCCACTCATATAAGCGGCGGAAGTA---GCGGT 212
Query 61 ggtggtggtggtggCGGAGGAGAGGTGAGTCGAAGTGGTTTATCTCGGATCCGTTCAGCT 120
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 213 GGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCT 272
Query 121 CCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCGAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 273 CCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAAC 332
Query 181 CTTTGTTTAACAGAGCTTCTTACTGG---TAATAACTCTGGAGGAGTGATAACGAGTC-- 235
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 333 CTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGGAGTGATAACGAGTCGT 392
Query 236 -ACGA---GTTC-----CC-GAGTTCTGTTGAGCAGGGATTGTATAATTATAATCACCAA 285
|||| |||| || ||||||||||||||| ||||||||| | || |||| |||
Sbjct 393 GACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTAT-A--ATCATCATCAA 449
Query 286 GGTGGTGGCTTTCACCGTCAGAATAGTTCTCCGGCGGATTTTCTTAGTGGGTCTGGTGT- 344
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 450 GGTGGTGGCTTTCACCGTCAGAATAGTTCTCCGGCTGATTTTCTTAGTGGGTCTGGT-TC 508
Query 345 TGGGACTGATGGGTTTTTCTC-AAGTTTTGGTATTCCGGCGAATTATGACTATTTGTCGA 403
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 509 TGGGACTGATGGGTATTTCTCTAA-TTTTGGTATTCCGGCGAATTATGACTATTTGTCGA 567
Query 404 CCAACGTTGACATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTC 463
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CCAACGTTGATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTC 627
Query 464 AGCTGAAAGAAGAGCAAATGAGTGGTGGGGTGTCAGGAATGATGGATATGAACATGGAAA 523
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 628 AGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATATGAACATGGACA 687
Query 524 AGATTCTTGAAGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCAACTCATC 583
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 688 AGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATC 747
Query 584 CTCGCAGCATTGCTGAGCGGGTGAGAAGAACGAGAATAAGTGATCGGATCAGGAGGCTGC 643
|||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 748 CTCGTAGCATTGCTGAACGGGTGAGAAGAACGCGAATAAGTGATCGGATTAGGAGGCTGC 807
Query 644 AAGAACTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTG 703
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTG 867
Query 704 TGGAGTACGTGAAGGCTCTTCAAAGCCAGATTCAGGAATTGACAGAGCAGCAGAAGAGAT 763
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 868 TGGAGTATGTGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGAT 927
Query 764 GCAAATGCAAACCTAAAGAAGAACAATAATGTTTCCTTTAGGATT-GATA 812
|||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 928 GCAAATGCAAACCTAAAGAAGAACAATAATGTATCCTTTAGGATTTGATA 977
> AT5G59630.1 | Symbols: | pseudogene, glycine-rich protein,
blastp match of 53% identity and 5.4e-10 P-value to GP|9837280|gb|AAG00510.1||AF285172
leaf senescence-associated receptor-like
protein kinase {Phaseolus vulgaris} | chr5:24021433-24023925
REVERSE LENGTH=2493
Length=2493
Score = 198 bits (107), Expect = 6e-50
Identities = 113/116 (97%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 87 GAGTCGAAGTGGTTTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACT 146
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAGTCGAATTGGTTTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACT 1540
Query 147 CGAAGAAGATGAAGAAGAAGGTTTAAAACCGAACCTTTGTTTAACAGAGCTTCTTA 202
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1541 CGAAGAAGATGAAGAAGAAGGTTTAAAACCTAACCTTTGTTTAACATAGCTTCTTA 1596
> AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 | chr5:12465057-12465713
REVERSE LENGTH=522
Length=522
Score = 152 bits (82), Expect = 5e-36
Identities = 94/100 (94%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 505 ATGGATATGAACATGGAAAAGATTCTTGAAGATTCAGTTCCTTGTAGGGTTCGTGCTAAA 564
||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATATGAACATGGAGAAGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAA 60
Query 565 CGTGGTTGTGCAACTCATCCTCGCAGCATTGCTGAGCGGG 604
||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 61 CGTGGTTGTGCTACTCATCCTCGTAGCATTGCTGAACGGG 100
> AT3G42310.1 | Symbols: | unknown protein; Has 66 Blast hits
to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 12; Fungi - 0; Plants - 18; Viruses - 31; Other Eukaryotes
- 5 (source: NCBI BLink). | chr3:14459818-14461497 FORWARD
LENGTH=246
Length=246
Score = 145 bits (78), Expect = 8e-34
Identities = 80/81 (99%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 87 GAGTCGAAGTGGTTTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACT 146
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 GAGTCGAATTGGTTTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACT 155
Query 147 CGAAGAAGATGAAGAAGAAGG 167
|||||||||||||||||||||
Sbjct 156 CGAAGAAGATGAAGAAGAAGG 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5