BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922741
Length=2389
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35710.1 | Symbols: | Protein kinase family protein with le... 2896 0.0
AT1G35680.1 | Symbols: | Ribosomal protein L21 | chr1:13208736... 243 8e-63
> AT1G35710.1 | Symbols: | Protein kinase family protein with
leucine-rich repeat domain | chr1:13220940-13224681 FORWARD
LENGTH=3658
Length=3658
Score = 2896 bits (1568), Expect = 0.0
Identities = 2031/2252 (90%), Gaps = 42/2252 (2%)
Strand=Plus/Plus
Query 155 AAATCTCAAGAACTTGACTGT-TCTTTATCTTCATCAGAATTATATAACTGGTGTCATTC 213
|||||||||||||||||| || |||||||||| | | ||||||| ||||||||||||||
Sbjct 1161 AAATCTCAAGAACTTGAC-GTATCTTTATCTTTACCTGAATTATTTAACTGGTGTCATT- 1218
Query 214 CCCCA-GAACTAGGCAACATGGAATCCATGATTGATTTAGAGTTAAGTCAGAACAATCTT 272
||||| || ||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 1219 CCCCAGGAGCTAGGCAACATGGAATCCATGATCAATTTAGATTTAAGTCAGAACAAACTT 1278
Query 273 ACTGGTTCAATTCCTTCTTCTTTTGGTAACTTTACCAAGCTGGAAAGTTTGTACCTCCGT 332
|| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1279 ACAGGTTCTGTTCCTGATTCCTTTGGTAACTTTACCAAGCTGGAAAGTTTGTACCTTCGT 1338
Query 333 GATAACCACCTCTCTGGTACGATCCCGCGAGGAGTGGCAAACTCTTCAGAGCTAACTGA- 391
| |||||||||||||||| ||||||||| |||||| |||||||||||| | |||||| |
Sbjct 1339 GTTAACCACCTCTCTGGTGCGATCCCGCCAGGAGTAGCAAACTCTTCACATCTAACT-AC 1397
Query 392 ATTGCTACTCGACATAAACAATTTCACCGGTTTCTTGCCTGAAAAC-ATTTGCAAAGGT- 449
||| |||| |||| ||||| ||||| |||||||| |||| |||| |||||||||||
Sbjct 1398 CTTGATACTTGACACCAACAACTTCACTGGTTTCTTTCCTG-AAACTGTTTGCAAAGGTA 1456
Query 450 GGCAAGCTTCAGAATTTTTCATTAGATTATAATCACCTCGAAGGTCATATCCCGAAAAGC 509
|| |||||||| ||| | ||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1457 GG-AAGCTTCAAAATATCTCATTGGATTACAATCACCTCGAAGGTCCTATCCCGAAAAGC 1515
Query 510 TTGAGAGATTGCAAGAGCCTGATCAGAGCAAAATTTGTAGGGAACAAATTCATTGGAAAT 569
||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||| ||
Sbjct 1516 TTGAGAGATTGCAAGAGCCTGATCAGAGCAAGATTTCTAGGAAACAAATTCACTGGCGAT 1575
Query 570 ATTTCTGAAGCATTTGGGGTTTACCCAGATCTTGATTTCATTGATCTCAGCCATAATAAA 629
|||| |||||| |||||| |||||||||| ||| | ||||||||| ||||||| || |||
Sbjct 1576 ATTTTTGAAGCTTTTGGGATTTACCCAGACCTTAACTTCATTGATTTCAGCCACAACAAA 1635
Query 630 TTCAACGGTGAAATTTCAAGCAACTGGCAGAAGAGTCCAAAGCTAGGTGCCTTGATCATG 689
||| ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1636 TTCCACGGTGAGATTTCTAGCAACTGGGAGAAGAGTCCAAAGCTAGGTGCCTTGATCATG 1695
Query 690 TCAAACAACAACATCACAGGTGCTATTCCACCAGAGATTTGGAACATGAAACAACTGGGC 749
||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||| |
Sbjct 1696 TCAAACAACAACATCACGGGTGCTATCCCAACAGAGATTTGGAACATGACACAACTAGTT 1755
Query 750 GAGCTAGATCTGTCTACCAACAACCTCACTGGTGAGCTTCCAGAAGCAATTGGAAATCTC 809
||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1756 GAGCTGGATCTATCTACCAACAACCTCTTTGGTGAACTTCCAGAAGCAATTGGAAATCTC 1815
Query 810 ACGGGTTTGTCGAAGCTACTACTGAATGGGAATAAGTTATCTGGAAGAGTTCCTACGGGT 869
||| |||||||| ||||| ||| ||||||||| |||||||||||||||||||| | |||
Sbjct 1816 ACGAATTTGTCGAGGCTACGACTTAATGGGAATCAGTTATCTGGAAGAGTTCCTGCAGGT 1875
Query 870 TTAAGTTTCTTAACCAATCTTGAGTCTCTTGACTTATCCTCAAACAGA-TTCAGCTCCCA 928
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 1876 TTAAGTTTCTTAACCAATCTTGAGTCTCTTGACTTATCCTCAAACA-ATTTCAGCTCAGA 1934
Query 929 GATCCCACAAACCTTCGACTCCTTTTTAAAGCTTCATGAAATGAACCTGAGCAAAAACAA 988
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1935 GATCCCACAAACCTTTGACTCCTTTTTAAAGCTTCATGACATGAACCTGAGCAGAAACAA 1994
Query 989 TTTCGATGGACGCATTCCCGGACTAACAAAGCTGACTCAGTTAACGCATCTTGATCTCAG 1048
||||| ||| |||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1995 ATTCGACGGAAGCATTCCCCGACTATCAAAGCTGACTCAGTTAACGCAACTTGATCTCAG 2054
Query 1049 CCACAACCAGCTCGACGGAGAAATCCCATCACAGCTCAGCTCCTTGCAGAGCCTCGACAA 1108
||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||
Sbjct 2055 CCACAACCAGCTCGACGGAGAAATCCCATCACAACTAAGCTCCCTGCAAAGCCTCGACAA 2114
Query 1109 GCTCAACCTCTCACACAACAATCTCTCAGGTTTCATTCCAACAACTTTCGAGAGCATGAA 1168
|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2115 GCTCGACCTCTCACACAACAATCTCTCAGGTCTCATTCCAACAACTTTCGAGGGCATGAT 2174
Query 1169 AGCGCTGACGTTCATCGATATATCAAATAATAAACTCGAGGGTCCGCTTCCAGACAATCC 1228
|||||||||| | ||||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct 2175 AGCGCTGACGAACGTCGATATATCAAACAATAAACTCGAAGGTCCGCTTCCAGATACTCC 2234
Query 1229 AGCGTTTC-AAAACGCAACATCAGATGCATTGGAGGGAAACAGAGGCTTATGCAGTAATA 1287
| |||||| |||| |||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 2235 AACGTTTCGAAAA-GCAACAGCAGATGCATTGGAGGAAAACATAGGCTTATGCAGTAATA 2293
Query 1288 TTCCTAAACAAAGGTTGAAATCATGCCCTATCACTTCTGGTGGGTTCCAA-AAGCCGAAG 1346
||||||||||||| ||| || | || || | | ||| ||| || || ||||||
Sbjct 2294 TTCCTAAACAAAGATTG-AA--A---CC-AT-GC--C--GTGAGTT-GAAGAAACCGAAG 2340
Query 1347 AAGAACGGCAACCTTCTTGTGTGGATACTAGTGCCAATCCTAGGAGCACTCGTCATTCTC 1406
|| || ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2341 AAAAATGGCAACCTTGTTGTGTGGATATTAGTGCCAATCCTAGGAGTACTCGTCATTCTC 2400
Query 1407 TCTATATGTGCAGGCGCATTTACCTACTACATTCGGAAACGAAAACCACACAATGGAAGA 1466
|||||||||||| | |||| ||||||| ||||||||||||||||| ||| |||||||||
Sbjct 2401 TCTATATGTGCAAACACATTCACCTACTGCATTCGGAAACGAAAACTACAAAATGGAAGA 2460
Query 1467 AACACAGATTCTGAAACTGGAGAGAATATGTCCATATTCAGCGTTGATGGCAAATTCAAA 1526
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 AACACAGATCCTGAAACAGGAGAGAATATGTCCATATTCAGCGTTGATGGCAAATTCAAA 2520
Query 1527 TACCAAGATATCATCGAATCAACAAACGAATTCGATCAAAGATACCTCATCGGAAGCGGA 1586
||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||
Sbjct 2521 TACCAAGATATCATCGAATCAACAAACGAATTCGATCCAACACACCTCATCGGAACCGGA 2580
Query 1587 GGATACAGCAAAGTCTACAAAGCAAACCTCCCAGATGCGATCGTAGCCGTGAAAAGGCTA 1646
||||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||| | |||
Sbjct 2581 GGATACAGCAAAGTCTACAGAGCAAACCTCCAAGATACAATCATAGCCGTTAAACGACTA 2640
Query 1647 CATGATACAATAGACGAAGAGATATCAAAGCCAGTGGTGAAGCAAGAGTTCCTAAACGAA 1706
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2641 CATGACACAATAGACGAAGAGATATCAAAGCCAGTTGTGAAGCAAGAGTTCCTAAACGAG 2700
Query 1707 GTAAGAGCGTTAACAGAGATCCGTCACCGCAACGTGGTGAAGCTCTTCGGCTTCTGCTCC 1766
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2701 GTAAAAGCATTAACAGAGATCCGTCACCGCAACGTTGTGAAGCTCTTCGGCTTCTGCTCC 2760
Query 1767 CACCGCCGCCACACGTTTCTGATCTACGAGTACATGGAAAAAGGAAGTTTAAACAAACTC 1826
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2761 CACCGCCGCCACACATTTCTGATCTACGAGTACATGGAAAAAGGAAGTTTAAACAAACTC 2820
Query 1827 TTAGCCAACGAAGAAGAAGCTAAGCGACTCACTTGGACCAAGAGGATCAACATCGTGAAA 1886
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2821 TTAGCCAACGACGAAGAAGCTAAGCGACTCACTTGGACCAAAAGGATCAACGTCGTGAAA 2880
Query 1887 GGTGTGGCTCACGCGTTATCGTATATGCACCATGACCGA-TCAACTCCGATCGTCCACCG 1945
|||||||||||||| |||||||||||||||||||||||| | ||| |||||||| |||||
Sbjct 2881 GGTGTGGCTCACGCTTTATCGTATATGCACCATGACCGAAT-AACACCGATCGTTCACCG 2939
Query 1946 TGATATTAGCAGCGGCAACATCCTTCTCGATAATGATTACACAGCTAAGATCTCTGATTT 2005
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2940 TGATATTAGCAGCGGAAACATCCTTCTCGATAACGATTACACAGCTAAGATCTCCGATTT 2999
Query 2006 TGGCACAGCGAAGCTTCTCAAGACGGATTCATCAAACTGGTCCGCCGTTGCTGGAACCTA 2065
||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3000 TGGTACAGCAAAACTTCTAAAGACGGATTCATCAAACTGGTCCGCCGTTGCTGGAACCTA 3059
Query 2066 CGGCTACGTCGCTCCAGAGTTTGCTTACACGATGAAGGTGACGGAGAAATGCGATGTGTA 2125
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3060 CGGCTACGTTGCACCAGAGTTTGCTTACACGATGAAGGTGACGGAGAAATGCGATGTGTA 3119
Query 2126 TAGCTTCGGGGTTTTGATACTCGAGGTT-ATAATGGGGAAGCATCCGGGAGATTTGGT-T 2183
|||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| |
Sbjct 3120 TAGCTTCGGGGTTTTGATACTCGAA-TTGATAATTGGGAAACATCCGGGAGATTTGGTAT 3178
Query 2184 GCGAGTTTGTCTTCGTCTCCGGGAGAAACTCTGTCCCTGAGAAGCATTTCCGATGAACGT 2243
||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||
Sbjct 3179 -CGAGTTTGTCTTCGTCTCCAGGAGAAGCTCTGTCGCTAAGAAGCATTTCCGATGAACGT 3237
Query 2244 ATATTAGAACCACGGGGGCAGAATAGAGAGAAGCTCATAAAGATGGTGGAAGTGGCTTTA 2303
|||||||||||||||| || ||||||||||||||| | |||||||||||| ||||||||
Sbjct 3238 GTATTAGAACCACGGGGACAAAATAGAGAGAAGCTCTTGAAGATGGTGGAAATGGCTTTA 3297
Query 2304 TCGTGTTTACAAGCAGATCC-GCAATCTCGGCCAACGATGTTATCAATCTCTAC-AGCTT 2361
| ||||||||||||| |||| | ||||||||||||||||||| |||||||| || | | |
Sbjct 3298 TTGTGTTTACAAGCAAATCCAG-AATCTCGGCCAACGATGTTGTCAATCTCCACTA-CAT 3355
Query 2362 TTTCTTAGAA-CTCATCTTC---ATCAATTTC 2389
|||||||||| || | |||| |||||||||
Sbjct 3356 TTTCTTAGAAACTGAACTTCTCCATCAATTTC 3387
> AT1G35680.1 | Symbols: | Ribosomal protein L21 | chr1:13208736-13210418
FORWARD LENGTH=876
Length=876
Score = 243 bits (131), Expect = 8e-63
Identities = 149/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1 TACTTTCTCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCT 60
|||||||||||||||||||||||||| ||| |||||||| || |||||||| ||||||||
Sbjct 77 TACTTTCTCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCT 136
Query 61 CTCTAAACCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGC 120
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 137 CTCTAAACCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGC 196
Query 121 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCTAAAT 158
||||||||||||||||||||||||||||||||| ||||
Sbjct 197 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCGAAAT 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118623887835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5