BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922746
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35750.1 | Symbols: APUM10, PUM10 | pumilio 10 | chr1:132533... 1332 0.0
AT1G35730.1 | Symbols: APUM9, PUM9 | pumilio 9 | chr1:13227324-... 1077 0.0
> AT1G35750.1 | Symbols: APUM10, PUM10 | pumilio 10 | chr1:13253398-13255570
REVERSE LENGTH=1587
Length=1587
Score = 1332 bits (721), Expect = 0.0
Identities = 1055/1206 (87%), Gaps = 63/1206 (5%)
Strand=Plus/Plus
Query 334 CCTCTGTTCGTCTTCAAAACAACAACTTTCATGGAGTTTCTTCTTCTCCGGGAGAGATAA 393
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 317 CCTCTGTTCGTGTTCAAAACAACAACTTTCATGGAGTTTCTCCTTCTCC-----AG---- 367
Query 394 GATTGCTTGGCCAT-CAAGATTCCTTTAACCCAAACGGATTTGAAGAGATGATGGCTATT 452
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 368 GATTGCTTGGCC-TACAAGATTCCTTTAACCCCAACGGATTTGAAGAGATGATGGCTTTT 426
Query 453 -AAGAATCACAGAGATTTTCTCTTGGACCACATGAATGTACCCATTAAGCGTATCTCACT 511
||| |||||| ||| || ||||| |||||||| |||| |||||| |||||| |||| |
Sbjct 427 AAAG-ATCACAAAGACTTCCTCTTAGACCACATCAATGAACCCATAAAGCGT-TCTC-CG 483
Query 512 TCCTTGTCACA-G-AAGCGTCT-CTTTTAGCAACGATGCGTTGATTTTTGAAGGAAATAG 568
| || ||| | | || || | | ||| ||| | | ||||||| |||||||||| |||
Sbjct 484 T--TTCTCAGAGGCAA-CG-ATGC-TTT--CAAGGGTTCGTTGATGTTTGAAGGAATTAG 536
Query 569 AGGTTCTTATCCAGAA-CAGAGTACTCTGATGAGAAGGTATTTGAAG-----GA---AGA 619
|| | || | || || | || | | ||| |||||| | || || | |||
Sbjct 537 -GG-T-TTCT-CA-AATCCTAG-CCGC-CATG-GAAGGT-TCTGGAGCTTCTTATCCAGA 587
Query 620 TGAGCCTAAGATCAATGGTGGTTTGCCTCTGAATCTCGTCTCCATGGTTGAGATTTACGG 679
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 588 TGAGCCTAAGATCAATGGTGGTTTGCCTCTGGATCTCGTCTCCATGGTTGAGATTTACGG 647
Query 680 ATCTGTGAACTTAATGGCCAAAGATCAGATTGGTTGTC-GAGTTTTGCAGAAACTGGTCA 738
|||||||||||||||||||| |||||||||||| || | ||| ||||||||||||||||
Sbjct 648 ATCTGTGAACTTAATGGCCAGAGATCAGATTGGGTG-CAGAGCTTTGCAGAAACTGGTCG 706
Query 739 AAGAAGGAACGATTCTTGAAGCTAAGGTTATATTTCATGAGATCATTGACCATGTGGTTG 798
||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||
Sbjct 707 AAGAAGGAACGGTTCTTGATTCTAAGGTTATATTCCTTGAGATCATTGACCATGTCGTTG 766
Query 799 AACTCTCCATGGATCCTTTTGGGAACTACATCGTCCAGAAGCTGTTAGATGTGAGTGATG 858
|||| |||||||||||||| ||||| |||||||||||||||||||||| |||| |||||
Sbjct 767 AACTTTCCATGGATCCTTTAGGGAATTACATCGTCCAGAAGCTGTTAGTTGTGTCTGATG 826
Query 859 AGGAACAGAGAACAATGATTGTGAGTGTATTAACCTTGACACCAAGGGAGCTTATCAAAA 918
|||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||
Sbjct 827 AGGAACAGAGAACAATGATTGTGAGTGTGTTAACGTCAAAACCAAGGGAGCTTATCAAAA 886
Query 919 TCTGTCTCAACACTTATGGGACAAGGGTTGTGCAGAAGATGATTAAAACAGTGAAAACAA 978
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 887 TCTGTCTCAACACTAATGGGACAAGGGTTATACAGAAGATGATTAAAACAGTGAAAACAA 946
Query 979 AGCAACAGATTGCATTGGTGAAGTCAGGTCTCAAACCGGGTTTTCTTGCTCTTGTGAACG 1038
| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||
Sbjct 947 AACAACAGATTGCATTGGTGAAGTCAGCTCTCGAACCGGGTTTTCTTGTTCTTGTCAACG 1006
Query 1039 ATT-TGAATGGG-AGCCATGTGCTACAGAGTTGCTTGGAGTTCCTTGGT-CCTAATGACA 1095
||| | |||||| | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1007 ATTCT-AATGGGTA-CCATGTGCTACAGAGTTGCTTGGAGTTCCTTG-TACCTAATGACA 1063
Query 1096 CCAAGTTTGTG-TTGGAAGCAGCTACA-AAGTACTGTGCTGAGATT-GCAACTCATCGCC 1152
|||||||||| ||| ||||||||||| || || |||||| | ||| ||||||||||
Sbjct 1064 ACAAGTTTGTGGTTG-AAGCAGCTACAGAA-TATTGTGCTCA-ATTAGCAACTCATCAAT 1120
Query 1153 ACGGATGCCGTGTGCTTCAATGCTGCCTTATAAACACTGTTGGACCGCAAAATGATAGAC 1212
|||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||| ||||
Sbjct 1121 ACGGATGCTATGTTCTTCAATGCAGCCTTATAAACACTGTTGGACTGCAACATGAGAGAC 1180
Query 1213 TCGTCGCTGAGATATTAAGAAACTCACATCATCTTTCACAGGATCCTTTCGGGAACTATG 1272
||||||||||||||| |||| |||||| || ||||| || |||||||||||||||||||
Sbjct 1181 TCGTCGCTGAGATATCAAGAGACTCACTTCGCCTTTCGCAAGATCCTTTCGGGAACTATG 1240
Query 1273 TGGTGCAGTGCCTAATAGAGCAACAAGTTTCTGCAGTGAACTTGCTGGTTC-AGTTTAGA 1331
||||||||||| ||||||| |||||||||||| |||||||||||||| ||| | ||||||
Sbjct 1241 TGGTGCAGTGCTTAATAGACCAACAAGTTTCTTCAGTGAACTTGCTGCTTCCA-TTTAGA 1299
Query 1332 ACACATTACG-CGGAGCTAGCGACTCAGAAGTTCAGTAGCCATGTAATTGAGAAGTGTCT 1390
||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1300 ACACATTGCATCG-AGCTAGCGACTCAGAAGTTCAGTAGCCATGTGATTGAGAAGTGTCT 1358
Query 1391 AAGAAAGTATCCAGAGAGTCGAGCTGAGATTGTCCGCGAGCTCCTCTCT-ATTCCAAACT 1449
|||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1359 AAGAAAGTATCCAGAGAGTCGAGCTGAGATCGTCCGCGAGCTCCTCTCTTAT-CCAAACT 1417
Query 1450 TTGAACAGCTTCTGCAGGATCCTTATGGAAACTATGTGATCCAAACAGCTCTCTCTGTAA 1509
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1418 TTGAACAGCTTCTGCAGGATCCTTATGCAAACTATGTGATCCAAACAGCTCTCTCTGTAA 1477
Query 1510 CCAAGG 1515
||||||
Sbjct 1478 CCAAGG 1483
Score = 340 bits (184), Expect = 2e-92
Identities = 259/294 (88%), Gaps = 10/294 (3%)
Strand=Plus/Plus
Query 40 ATGGAGA-TCTTAACTTCAGACGAGCTTCAAATCATCGTCCTCTTCCTGATTCTGGTTCC 98
||||||| | |||||||| ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 1 ATGGAGATTTTTAACTTCGGACAAGCTTCCGATCATCGTCGTCTTCCTGATTTTGGTTCA 60
Query 99 GGTGGGTTTTTACAAAATCTCGACACAAACCCATTTCTGAAGAATCAATATTACAACAAG 158
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GGTGGGTTTTTACAAAGTCTCGACACAAACCCATTTCTGAAGAATCAGTATTACAACAAC 120
Query 159 AGTGTTGAAGCTCTGGATTTGTGTAGAAAGCTTAGTAAAATGGGTATCTCTTGTGACATG 218
||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 AGTGTTGAAGCTCTGGAGTTGTGTAAAAAGCTTAACAAAATGGGTATCTCTTGTGACATG 180
Query 219 AGTATCTGGACCAAACCCGAAGAACTGTTCCGGGTCGACCCGGATGATTTTGGGTCTAGA 278
||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 181 AGTATTTGGACCAAACCCGAAGAACCATTCCGGGTCGACCCGGGTGATTTTGGG----G- 235
Query 279 GCTAGAACAACTCTTCATGGGTCTTCTGGGTTCGACCAGAATCTGAATGAAGCT 332
||| || | ||||||||| ||||| |||||| ||||||||||| | || ||||
Sbjct 236 -CTA-AA-A-CTCTTCATGAGTCTTTTGGGTTTGACCAGAATCTCACTGGAGCT 285
Score = 156 bits (84), Expect = 8e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1582 AGGGAGCTGTTCGAGCTAGATTGGTGGAGAAAGTTTATAGGTTTGGGAATCTACAGTCGA 1641
||||||| ||| |||||||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct 1481 AGGGAGCAGTTAGAGCTAGATTAGTGGAGAAAGTTAAAAGGTTTGGGAAACTACAGTCGA 1540
Query 1642 GTCCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGT 1686
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ATCCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGT 1585
> AT1G35730.1 | Symbols: APUM9, PUM9 | pumilio 9 | chr1:13227324-13229796
REVERSE LENGTH=1695
Length=1695
Score = 1077 bits (583), Expect = 0.0
Identities = 775/868 (89%), Gaps = 12/868 (1%)
Strand=Plus/Plus
Query 652 ATCTCGTCTCCATGGTTGAGATTTACGGATCTGTGAACTTAATGGCCAAAGATCAGATTG 711
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 728 ATCTCGTCTCCATGGTTGAGATTTATGGATCTGTGAACTTAATGGCGAAAGATCAGATTG 787
Query 712 GTTGTC-GAGTTTTGCAGAAACTGGTCAAAGAAGGAACGA-TTCTTGAAGCTAAGGTTAT 769
|||| | |||||||||||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 788 GTTG-CAGAGTTTTGCAGAAACTGGTCGAAGAAGGAAC-ATTTCATGAAGCTAAGGTTAT 845
Query 770 ATTTCATG-AGATCATTGACCATGTGGTTGAACTCTCCATGGATCCTTTTGGGAACTACA 828
||| | || | |||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 846 ATTACTTGCA-ATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTTGGGAATTACA 904
Query 829 TCGTCCAGAAGCTGTTAGATGTGAGTGATGAGGAACAGAGAACAATGATTGTGAGTGTAT 888
| || ||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
Sbjct 905 TTGTTCAGAAGCTGTTTGATGTGAGTGATGAGGAACAGAGGACGTTGATTGTGAGTGTGT 964
Query 889 TAACCTTGACA-CCAAGGGAGCTTATCAAAATCTGTCTCAACACTTATGGGACAAGGGTT 947
||| | | | | |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 965 TAA-CGTCAAATCCAAGGGAGCTTATCAGAATCTGTCTTAACACTTATGGGACAAGGGTT 1023
Query 948 GTGCAGAAGATGATTAAAACAGTGAAAACAAAGCAACAGATTGCATTGGTGAAGTCAGGT 1007
||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1024 GTGCAGAAGATGATTGAAACTGTGAAAACAAAACAGCAGATTGCATTGGTGAAGTCAGGT 1083
Query 1008 CTCAAACCGGGTTTTCTTGCTCTTGTGAACGATTTGAATGGGAGCCATGTGCTACAGAGT 1067
||||||||||| |||||||||||||| || ||| ||||||||| ||||||| ||||||||
Sbjct 1084 CTCAAACCGGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGGAACCATGTGATACAGAGT 1143
Query 1068 TGCTTGGAGTTCCTTGGTCCTAATGACACCAAGTTTGTGTTGGAAGCAGCTACAAAGTAC 1127
|||||| | |||||| |||||||||| |||||||||| ||||| ||||| ||||||
Sbjct 1144 TGCTTGCAAACCCTTGGCCCTAATGACAATGAGTTTGTGTTAGAAGCTGCTACTAAGTAC 1203
Query 1128 TGTGCTGAGATTGCAACTCATCGCCACGGATGCCGTGTGCTTCAATGCTGCCTTAT-AAA 1186
|||||||||||||| | |||||| ||||||||| |||| |||||||||||| || | |||
Sbjct 1204 TGTGCTGAGATTGCTATTCATCGACACGGATGCTGTGTTCTTCAATGCTGCATT-TCAAA 1262
Query 1187 CACTGTTGGACCGCAAAATGATAGACTCGTCGCTGAGATATTAAGAAACTCACATCATCT 1246
| ||||||||| |||| ||| ||||||||||||||||||| ||||||||| | ||| ||
Sbjct 1263 CTCTGTTGGACTGCAACGTGAAAGACTCGTCGCTGAGATATCAAGAAACTCGCTTCACCT 1322
Query 1247 TTCACAGGATCCTTTCGGGAACTATGTGGTGCAGTGCCTAATAGAGCAACAAGTTTCTGC 1306
||| ||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 1323 TTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGATCAACAAGTTTCTGC 1382
Query 1307 AGTGAACTTGCTGGTTCAGTTTAGAACACATTACGCGGAGCTAGCGACTCAGAAGTTCAG 1366
|||||| ||||||||||||||||||| || ||||| ||| |||| ||||||||||| ||
Sbjct 1383 AGTGAAGTTGCTGGTTCAGTTTAGAATGCACTACGCCGAGTTAGCTACTCAGAAGTTTAG 1442
Query 1367 TAGCCATGTAATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAGCTGAGATTGTCCG 1426
|||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1443 TAGCCACGTGATTGAGAAGTGTCTAAGGAAGTATCCAGAGAGTCGAGCTGAGATCGTCCG 1502
Query 1427 CGAGCTCCTCTCTATTCCAAACTTTGAACAGCTTCTGCAGGATCCTTATG-GAAACTATG 1485
|||||||||| | |||||||||||||| | |||||||| |||||||||| ||| |||||
Sbjct 1503 TGAGCTCCTCTGTGTTCCAAACTTTGAATATCTTCTGCAAGATCCTTATGCGAA-CTATG 1561
Query 1486 TGATCCAAACAGCTCTCTCTGTAACCAA 1513
|||||||||| |||||||||||||||||
Sbjct 1562 TGATCCAAACTGCTCTCTCTGTAACCAA 1589
Score = 255 bits (138), Expect = 8e-67
Identities = 255/305 (84%), Gaps = 33/305 (11%)
Strand=Plus/Plus
Query 21 ATGGATTTTGGAGGTTTTCATGGAGATCTT-AACTTCAGACGAGCTTCAAATCATCGTCC 79
|||| ||||||||||||| ||||||| ||| |||||| || ||||||| |||||||| |
Sbjct 1 ATGGGTTTTGGAGGTTTTAATGGAGA-CTTCAACTTCCGAGGAGCTTCCGATCATCGT-C 58
Query 80 TCTTCCTGATTCTGGTTCCGGTGGGTTTTTACAAAATCTCGACACAAACCCATTTCTGAA 139
| | | | |||||| | ||||||||||| | |||||||||||||||||||||
Sbjct 59 -C-T-C----T-TGGTTCTGATGGGTTTTTACCGAGTCTCGACACAAACCCATTTCT--- 107
Query 140 GAATCAATATTACAACAAGAGTGTTGAAGCTCTGGATTTGTGTAGAAAGCTT-AGTAAAA 198
| | || | || |||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 108 G-A--AA-A--ACCACAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCAC-AAAA 160
Query 199 TGGGTATCTCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACTGTTCCGGGTCGACC 258
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 161 TGGGTATCTCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACAGTTCCGGGTCGACC 220
Query 259 CG-GATGATTTTGGGTCTAGAGCTAGAACAACTCTTCATGGGTCTTCTGGGTTCGACCAG 317
|| | ||| |||||| | ||||||| ||||||||||||||||||||| ||||||
Sbjct 221 CGAG-TGAGTTTGGG----G--CTAGAAC---TCTTCATGGGTCTTCTGGGTTTGACCAG 270
Query 318 AATCT 322
|||||
Sbjct 271 AATCT 275
Score = 128 bits (69), Expect = 2e-28
Identities = 93/105 (89%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1584 GGAGCTGTTCGAGCTAGATTGGTGGAGAAAGTTTATAGGTTTGGGAATCTACAGTCGAGT 1643
||| ||||||| |||| |||||||| ||| ||||| |||| ||||| ||||| |||||
Sbjct 1591 GGACCTGTTCGTGCTAAATTGGTGGCGAAGGTTTACAGGTACGGGAAACTACACTCGAGC 1650
Query 1644 CCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGTGA 1688
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CCTTACTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGTGA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5