BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922759
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35910.1 | Symbols: TPPD | Haloacid dehalogenase-like hydrol... 1814 0.0
> AT1G35910.1 | Symbols: TPPD | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:13363003-13365060 REVERSE
LENGTH=1402
Length=1402
Score = 1814 bits (982), Expect = 0.0
Identities = 1096/1152 (95%), Gaps = 4/1152 (0%)
Strand=Plus/Plus
Query 1 tttttttCCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCAAAAGGCA 60
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 76 TTTTTTTTCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCTAAAGGCA 135
Query 61 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 195
Query 121 ACATCAGCATTCCCCGGAAGAAACTTGTACAGAAGCTAGAGACCGACCCGAGTCAAACCC 180
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 196 ACATCAGCATTCCCCGGAAGAAACTCGTGCAGAAGCTAGAGGCCGACCCGAGTCAAACCC 255
Query 181 GAACCCACTCTTGGATCGAAGCCATGAGGGCTTCTTCCCCGACCCGAATCCGACCGGGGA 240
| | |||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 256 GTATCCACACTTGGATCGAAGCCATGAGGGCTTCTTCCCCAACCCGTACCCGACCGGGGA 315
Query 241 ACATATCCTCTC-TCCCGGAGTCCGATGAGGAAGATGAATACTCTTCTTGGATAGCTCAA 299
||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 316 ACATATC-TCCCCTCCCGGAGTCCGATGAGGAGGATGAATACTCTTCTTGGATGGCTCAA 374
Query 300 CACCCATCGGCTTTAACCATGTTTGAAGAGATCGCTGAAGCTTCCAAAGGGAAACAAATC 359
||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 375 CACCCGTCAGCTTTAACCATGTTTGAAGAGATAGCTGAAGCTTCAAAAGGGAAACAAATC 434
Query 360 GTGATGTTTCTTGACTATGACGGTACATTATCGCCCATTGTAGAAAACCCGGATCGGGCT 419
||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 435 GTGATGTTTCTCGACTATGACGGTACATTATCCCCCATTGTTGAAAACCCTGATCGAGCT 494
Query 420 TACATGTCTGACGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTACCCGACCGCG 479
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 495 TACATGTCTGAAGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTTCCCGACCGCG 554
Query 480 ATTGTCACTGGAAGATGCCGCGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATTGTCACTGGAAGATGCCGTGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 614
Query 540 TATGCCGGTAGCCATGGAATGGACATCAAAGGACCTTCCaaaa-aaaCAAAACATAACAA 598
||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 615 TATGCAGGTAGCCATGGAATGGACATCAAAGGACCTTCCAAAAGAAACAAA-CATAACAA 673
Query 599 GAACAATAAAGGTGTTCTTTTCCAAGCGGCGAATGAGTTCTTGCCTATGATTGACCAGGT 658
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 674 GAACAATAAAGGAGTTCTTTTCCAAGCGGCGAATGAGTTTTTGCCTATGATTGACAAGGT 733
Query 659 CTCTAAGTGTCTAGTGGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAATAACAA 718
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 734 CTCTAAGTGTCTAGTAGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAACAACAA 793
Query 719 GTTCTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTAGTAGCGGA 778
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 794 GTTTTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTGGTAGCGGA 853
Query 779 ACACGTGACATCGATATTGAGTGAGTATCCAAAACTGAGGTTAACACAAGGAAGAAAAGT 838
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 854 ACACGTGACATCGATATTGAGTGAGTATCCGAAACTGAGGTTGACACAAGGAAGAAAAGT 913
Query 839 TTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 973
Query 899 ATCTTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTACATCGGGGATGATCGTAC 958
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 974 ATCCTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTATATAGGAGATGATCGTAC 1033
Query 959 GGACGAGGATGCTTTTAAGGTGCTGAAAAAGAAAGGACAAGGCTTTGGTATACTTGTGTC 1018
||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1034 GGACGAGGATGCTTTCAAGGTTTTGAGAAACAAAGGACAAGGCTTTGGTATACTTGTGTC 1093
Query 1019 CAAAGTTCCAAAGGAAACGAGTGCTACATATTCTCTACAACAACCTTCCGAGGTAGGAGA 1078
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1094 CAAAATTCCAAAGGAAACGAGTGCTACATATTCTCTACAAGAACCTTCCGAGGTAGGAGA 1153
Query 1079 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCGAGTTTC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1154 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCCAATTTC 1213
Query 1139 CTGACTTTAATT 1150
||||| | ||||
Sbjct 1214 CTGACATAAATT 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5