BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922760
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36050.1 | Symbols: | Endoplasmic reticulum vesicle transpo... 1919 0.0
> AT1G36050.1 | Symbols: | Endoplasmic reticulum vesicle transporter
protein | chr1:13450204-13453683 FORWARD LENGTH=1733
Length=1733
Score = 1919 bits (1039), Expect = 0.0
Identities = 1129/1173 (96%), Gaps = 3/1173 (0%)
Strand=Plus/Plus
Query 1 TCGTCCCCGGAGGTGTTT--AAATGGCCGGGATCTTGAATAAACTGCGGAATCTAGATGC 58
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 242 TCGTTCCCGGAGGTGTTTAAAAATGGCCGGGATCTTGAATAAATTGCGGAATCTAGATGC 301
Query 59 ATATCCTAAGATCAATGAAGATTTCTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 302 ATATCCTAAGATCAATGAAGATTTTTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 361
Query 119 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 421
Query 179 AGTCACAGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGTATCAACTT 238
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 422 AGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACTT 481
Query 239 TGATATTACTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 541
Query 299 TGGAGAGCTGCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGGAGAGCTTCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 601
Query 359 CAACACTATAGAAGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAAACCACTGCA 418
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 602 CAACACTATAGAGGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAACCCACTGCA 661
Query 419 GAAACATGGTGGCAGGCTGGAACATAACGAGACTTACTGTGGTTCTTGCTATGGTGCTGA 478
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 662 GAAACATGGTGGCAGGCTGGGACATAATGAGACTTACTGTGGTTCTTGCTATGGGGCTGA 721
Query 479 AGCGGAAGAGCATGACTGCTGCAATTCATGTGAGGATGTTCGTGAAGCTTATAGAAAGAA 538
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 722 AGCGGAAGAGCATGACTGCTGCAATTCGTGTGAGGATGTTCGTGAAGCATATAGAAAGAA 781
Query 539 AGGTTGGGGGGTTACAAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGGTTGGGGGGTTACTAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 841
Query 599 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATCTACGGGTTCTTGGAGGTCAATAA 658
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 842 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATATATGGGTTCTTGGAGGTCAATAA 901
Query 659 GGTGGCTGGAAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGTGTGCACGT 718
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 902 GGTGGCTGGGAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGCGTGCATGT 961
Query 719 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAATATAAGTCATAAGATCAATAGACT 778
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 962 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAACATAAGTCACAAGATCAATAGACT 1021
Query 779 GACTTATGGGGACTACTTTCCTGGTGTTGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 838
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1022 TACTTATGGAGACTACTTTCCTGGCGTCGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 1081
Query 839 AGACACACCTAATGCTATGTACCAATACTTCATCAAGGTTGTACCAACAGTATACACAGA 898
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1082 AGACACACCTAATGCTATGTACCAATACTTTATCAAGGTTGTACCAACAGTATACACAGA 1141
Query 899 TATCAGAGGACACACAATTCAGTCAAATCAGTTCTCGGTGACCGAACATGTAAAGAGCTC 958
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1142 TATCAGAGGACACACAATTCAATCGAATCAGTTCTCAGTGACCGAACATGTAAAGAGCTC 1201
Query 959 AGAAGCGGGTCAGCTGCAATCCTTACCAGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1018
|||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1202 AGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1261
Query 1019 CAAGGTAACATTTACGGAGGAACACATATCGTTCTTGCACTTCTTGACGAATGTTTGCGC 1078
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1262 CAAGGTAACATTTACGGAGGAACACATATCATTCTTGCACTTCTTGACGAATGTTTGCGC 1321
Query 1079 TATAGTCGGAGGTGTTTTTACAGTATCCGGGATAATAGATGCGTTTATATACCATGGTCA 1138
||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1322 CATAGTTGGAGGTGTCTTCACAGTGTCCGGGATAATAGACGCGTTTATATACCATGGTCA 1381
Query 1139 AAAAGCTATCAAGAAGAAGATGGAAATTG-GTA 1170
||||||||||||||||||||||||||||| |||
Sbjct 1382 AAAAGCTATCAAGAAGAAGATGGAAATTGTGTA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5