BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922765
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36150.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 344 3e-94
> AT1G36150.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:13528257-13529470
FORWARD LENGTH=771
Length=771
Score = 344 bits (186), Expect = 3e-94
Identities = 242/269 (90%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 21 ATGAAGCCA-CCGTTTGTTCTTCTATCTATTACACTATTAGTATCATCATCACTATCGGA 79
||||||||| || |||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 1 ATGAAGCCATCC-TTTGTTCTTCTATCTATTGTACTATTACTCTCATCATCACTATCGGA 59
Query 80 TGCAGCCGACTTTGGATCGCCGTCACAGCCACCGTTGATGTCTCCAACACCAAAACCATC 139
|||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||
Sbjct 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACCGTCGATGGCTCCAACACCGCAACCATC 119
Query 140 AAACTCCATCGACTGTTCCAGCATCATCTACAACATGATGGATTGTCTATCCTTCTTAAC 199
|||||||| ||||||||||||| |||| |||| |||| | |||||||| |||||||||||
Sbjct 120 AAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAAC 179
Query 200 CGTCGAATCAACCGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTCT 259
||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 180 CGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTCT 239
Query 260 TGAA-TATAACCCAAAGTGTCTTTGTTCT 287
| || |||| ||| ||||||||||| |||
Sbjct 240 T-AACTATAGCCCTAAGTGTCTTTGCTCT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14376576214
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5