BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922771

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36240.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   588    1e-167


> AT1G36240.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr1:13614890-13616233 FORWARD LENGTH=339
Length=339

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 332/339 (98%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  23   ATGGTTGCAGCGAAGAAGACGAAGAAGTCTCATGAAGGAATCAACAGCAGATTGGCTTTG  82
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTGCAGCGAAGAAGACGAAGAAGTCCCATGAAGGAATCAACAGCAGATTGGCTTTG  60

Query  83   GTGATGAAGAGTGGCAAATACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCAGT  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTGATGAAGAGTGGCAAATACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCAGT  120

Query  143  TCCAAAGGTAAGCTGATATTTATATCTAGCAATTGCCCACCATTGAGGAGGTCTGAGATT  202
            |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  TCCAAAGGTAAGTTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCTGAGATT  180

Query  203  GAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGAAACAATGTTGAT  262
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  181  GAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATAGAAACAATGTTGAT  240

Query  263  CTTGGTACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCAGGT  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTTGGTACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCAGGT  300

Query  323  GACTCTGACATCATCAAGGCACTTCCTGGAGACCAGTGA  361
            |||||||||||||||||| | ||||||||||||||||||
Sbjct  301  GACTCTGACATCATCAAGTCGCTTCCTGGAGACCAGTGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5