BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922773

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4...   224    8e-58


> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754 
REVERSE LENGTH=1288
Length=1288

 Score =  224 bits (121),  Expect = 8e-58
 Identities = 151/165 (92%), Gaps = 4/165 (2%)
 Strand=Plus/Plus

Query  323  GAAAAGGAAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGGTTGA  382
            ||||| | ||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct  523  GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTAGAGTTGA  581

Query  383  AGAGAGTAGTAATACAGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGA  442
            | ||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||
Sbjct  582  AAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGA  641

Query  443  GTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAG  487
            |||||||||||||||||||||||||  | ||||||||||||||||
Sbjct  642  GTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAG  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30894000405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5