BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922779
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7... 2907 0.0
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6... 835 0.0
> AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase
7 | chr1:13696042-13698639 REVERSE LENGTH=2058
Length=2058
Score = 2907 bits (1574), Expect = 0.0
Identities = 1753/1839 (95%), Gaps = 14/1839 (1%)
Strand=Plus/Plus
Query 1 TCTTCATCTTCTTCAAATTTTATGGATTTGAGCCGCTCTCAATCTAATTTTCCATTAGGG 60
|||||||| ||||||| |||||||||||||| || |||||| | ||||||| |||||||
Sbjct 43 TCTTCATCATCTTCAACGTTTATGGATTTGAGTCGTTCTCAAACAAATTTTCAATTAGGG 102
Query 61 TTTGGTTGTTCTCACGCATCAATGACTCCAACACCAGCACCAAGAGCTCCAATCGCAGAC 120
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 103 TTTGGTTGTTCACACGCATCAATGACTCCAACACCAACACCAAGAGCTCCAATCGCAGAC 162
Query 121 GATTCGATTAATCTACAAGTCGATCAAAGTTTCCGATCATTACCAACAACTTTCTCTCCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GATTCGATTAATCTACAAGTCGATCAAAGTTTCCGATCATTACCAACAACTTTCTCTCCG 222
Query 181 ATTCCGTTGCAATTACTCGAACAAAAAGTCGAGAAG---ATCACCGTCGATGAGCCAAAG 237
|||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||
Sbjct 223 ATTCCGTTACAATTACTCGAACAAAAAGCCGAGAAGACCACCACCGTTGATGAGCCAAAG 282
Query 238 --A-A---A-GA--CGGAGGAGATCAGAAA-GAAGACGAGCATTTCAGAATCTTAGGTCA 287
| | | || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 283 AAAGATGGAGGAGGAGGAGGAGATCA-AAAGGAAGACGAGCATTTCAGAATCTTAGGTCA 341
Query 288 TCATATGTGTCTCAAAAGGCAAAGAGATTGTCCACTTTTGTTAACTCAAGCGAAGCATCC 347
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 342 CCATATGTGTCTCAAAAGGCAAAGAGATTGTCCACTTTTGTTAACGCAATCAAAGCATCC 401
Query 348 GAAGAGAAGTTCCATTGGTGATACAGATCTGGAATCGAGACGTGCTGCTGTACGAGCGTG 407
||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 402 GAAGAGAAGTTCCATCGGTGATTCAGATCTGGAATCGCGACGTGCTGCTGTACGAGCTTG 461
Query 408 GGGTGATCAACCAATTCATTTGGCGGATCCTGATATTCATGAGCTTATGGAGAAAGAGAA 467
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GGGTGATCAACCGATTCATTTGGCGGATCCTGATATTCATGAGCTTATGGAGAAAGAGAA 521
Query 468 GCAAAGACAAGTAAGAGGAATTGAATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGT 527
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GCAACGACAAGTAAGAGGAATTGAATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGT 581
Query 528 AATGGAAGCTTTAGGTAGTCATTTGACGAATAAATACTCTGAAGGTATGCCTGGAGCTAG 587
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 AATGGAAGCTTTAGGTAGTCATTTAACGAATAAATACTCTGAAGGTATGCCTGGAGCTAG 641
Query 588 ATACTATACTGGGAATCAATATATTGATCAGATTGAGAATCTGTGTATTGAAAGAGCTCT 647
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 642 ATACTATACTGGGAATCAATATATTGATCAGATTGAGAATCTCTGTATTGAGCGTGCTCT 701
Query 648 TACTGCGTTTGGTCTTGAATCTGATAAATGGGGTGTTAATGTTCAGCCGTATTCTTGTAC 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 702 TACTGCGTTTGGTCTTGAATCTGATAAATGGGGTGTTAATGTTCAGCCTTATTCTTGTAC 761
Query 708 TTCTGCTAATTTTGCGGTGTATACCGGACTTTTATTGCCGGGTGAACGGATTATGGGGCT 767
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 762 TTCTGCTAACTTCGCGGTGTATACCGGACTTTTATTGCCCGGTGAACGGATTATGGGGCT 821
Query 768 TGATTCTCCTTCTGGTGGGCATATGAGTCATGGGTATTGTACTCCTGGTGGGAAGAAGAT 827
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 822 TGATTCGCCTTCTGGTGGTCATATGAGTCATGGTTATTGTACTCCTGGTGGGAAGAAGAT 881
Query 828 TTCGGCTGCTTCGATTTTCTTTGAGAGTTTTCCTTATAAAGTGAATCCTCAAACTGGGTA 887
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TTCGGCTGCTTCCATCTTCTTTGAGAGTTTTCCTTATAAAGTGAATCCTCAAACTGGGTA 941
Query 888 TATTGATTATGATAAGCTTGAAGATAAGGCGCTTGATTACCGTCCAAAGATTCTTATTTG 947
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 942 TATTGATTATGATAAGCTTGAAGATAAGGCGCTTGATTACCGTCCTAAGATTCTTATTTG 1001
Query 948 TGGAGGGAGTTCTTATCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGACAA 1007
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1002 TGGTGGGAGTTCTTATCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGATAA 1061
Query 1008 GTGTGGAGCTGTTTTGATGTGTGATATGGCTCATATAAGCGGGCTTGTTGCGACTAAGGA 1067
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1062 GTGTGGAGCTGTTTTGATGTGTGATATGGCTCATATTAGCGGTCTTGTTGCAACTAAGGA 1121
Query 1068 ATGTTCAAATCCATTTGATCACTGTGACATAGTTACCTCCACTACCCACAAAGGTCTACG 1127
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1122 ATGTTCAAATCCATTTGATCACTGTGACATAGTAACCTCCACTACTCACAAAGGTCTACG 1181
Query 1128 TGGTCCTAGAGGAGGTATCATCTTCTACAGGAGAGGCCCAAAGATAAGAAAGCAGGGCCT 1187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TGGTCCTAGAGGAGGTATCATCTTCTACAGGAGAGGCCCAAAGATAAGAAAGCAGGGCCA 1241
Query 1188 TCACTCAAGCCATTCTGACACTTCCACGCATTACGATTTAGAGGAAAAGATCAACTTTGC 1247
|||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1242 TCACTCTAGCCATTGTGACACTTCCACGCATTACGATCTAGAGGAAAAGATCAACTTTGC 1301
Query 1248 TGTTTTTCCATCGCTACAAGGAGGTCCACACAACAACCATATCGCAGCTCTTGCCATTGC 1307
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1302 TGTTTTTCCATCTCTACAAGGAGGTCCACACAACAACCATATCGCTGCTCTTGCCATTGC 1361
Query 1308 CTTGAAACAAGTGGCTACTCCAGAGTACAAAGCTTACATACAACAGATGAAGAAAAACGC 1367
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 ATTGAAACAAGTGGCCACTCCAGAGTACAAAGCTTACATACAACAGATGAAGAAAAACGC 1421
Query 1368 CCAAGCTTTAGCAGCAGCTCTGCTTAGAAGAAAATGCAGACTGGTTACAGGTGGCACAGA 1427
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1422 CCAAGCTTTAGCAGCAGCTCTTCTTAGAAGAAAATGCAGACTGGTTACTGGTGGTACAGA 1481
Query 1428 CAACCATTTGTTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAA 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CAACCATTTGTTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAA 1541
Query 1488 AGTGTGCGAGATGTGCCATATAACCTTAAACAAGACTGCTATATTCGGGGACAATGGTAC 1547
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1542 AGTGTGTGAGATGTGCCATATCACTTTAAACAAGACGGCTATATTCGGGGACAATGGTAC 1601
Query 1548 AATATCTCCTGGAGGTGTAAGAATAGGGACACCTGCGATGACAACCCGAGGCTGTATAGA 1607
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1602 AATATCTCCTGGAGGTGTAAGAATAGGGACACCCGCAATGACAACCCGAGGCTGTATAGA 1661
Query 1608 GTCTGATTTCGAGACAATGGCGGATTTTCTGATAAAGGCGGCTCAGATAACGAGTGCGTT 1667
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1662 GTCTGATTTCGAGACAATGGCGGATTTTCTGATAAAGGCGGCTCAGATAACAAGTGCGTT 1721
Query 1668 GCAGAGAGAGCATGGGAAGTCACACAAGGAGTTTGTGAAAAGTTTATGCACCAACAAAGA 1727
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 GCAGAGAGAGCATGGAAAGTCACACAAGGAGTTTGTGAAAAGTTTATGCACCAACAAAGA 1781
Query 1728 AATATCTGAGCTTAGAAACCGAGTCGAAGCTTTTGCTTTGCAGTATGAGATGCCTGCTTC 1787
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1782 CATAGCTGAGCTTAGAAACCGAGTCGAAGCATTTGCTTTGCAGTATGAGATGCCTGCTTC 1841
Query 1788 TCTTATTCGAATTGAATGAAAGAAATTTTCACACAACAG 1826
||||||||||||||||||||||||| | ||||||||||
Sbjct 1842 TCTTATTCGAATTGAATGAAAGAAAACTCCACACAACAG 1880
> AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase
6 | chr1:7754321-7757383 FORWARD LENGTH=2374
Length=2374
Score = 835 bits (452), Expect = 0.0
Identities = 1085/1385 (78%), Gaps = 66/1385 (5%)
Strand=Plus/Plus
Query 433 GATCCTGATATTCATGAGCTTATGGAGAAA-GAGAAGCAAAGACAAGTAAGAGGAATTGA 491
|||||||| ||||||||| ||||||| ||| |||||||| |||||| | ||||| |||||
Sbjct 714 GATCCTGAGATTCATGAGTTTATGGA-AAAGGAGAAGCAGAGACAATTTAGAGGTATTGA 772
Query 492 -ATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGTAATGGAAGCTTTAGGTAGTCATT 550
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 773 GCTT-ATAGCTTCTGAGAATTTCGTGTGTAGAGCTGTGATGGAAGCTTTAGGAAGTCATT 831
Query 551 TGACGAATAAATACTCTGAAGGTATGCCTGGAGCTAGATACTATACTGGGAATCAATATA 610
|||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 832 TGACTAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTATACGGGGAATCAGTATA 891
Query 611 TTGATCAGATTGAGAATCTGTGT-ATTGAAAGAGCTCTTACTGCGTTTGGTCTTGAATC- 668
||||||||||||||| ||| || | || | || ||| | || ||||| || ||||
Sbjct 892 TTGATCAGATTGAGATTCTTTGCCAA-GAGCGTGCGCTTGCAGCTTTTGGACTA-AATCA 949
Query 669 TGATAAATGGGGTGTTAATGTTCAGCCGTATTCTTGTACTTCTGCTAATTTTGCGGTGTA 728
||| |||||||| |||||||| ||||| ||||| || |||||||| ||||| || || |
Sbjct 950 TGAGAAATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCTGCCAATTTCGCTGTTT- 1008
Query 729 T-ACCGGACTTTT-ATTGCCGGGTGAACGGATTATGGGGCTTG-ATTCTCCTTCTGGTGG 785
| || || ||||| || ||| |||||||| |||||||| ||| ||||||| || |||||
Sbjct 1009 TCACTGGTCTTTTGAT-GCCCGGTGAACGAATTATGGGA-TTGGATTCTCCCTCAGGTGG 1066
Query 786 GCATATGAGTCATGGGTATTGTACTCCTGGTGGGAAGAAGATT-TC-GGCTGCTTCGATT 843
||||||||||||||||||| ||| || ||||||||||| | | || || ||| || ||
Sbjct 1067 TCATATGAGTCATGGGTATTATACACCAGGTGGGAAGAA-AGTCTCTGG-TGCGTCTATA 1124
Query 844 TTCTTTGAGAGTTTTCCTTATAAAGT-GAATCCTCAAACTGGGTATATTGATTATGATAA 902
||||||||||| ||||| ||||| || || |||| || |||||||||||||| |||||
Sbjct 1125 TTCTTTGAGAGCTTTCCATATAAGGTTGAC-CCTCGTACAGGGTATATTGATTACGATAA 1183
Query 903 GCTTGAAGATAAGGCGCTTGATTACCGTCCAAAGATTCTTATTTGTGGAGGGAGTTCTTA 962
|||||| || ||||||||||| || ||||| ||||| ||||||||||| |||||||| ||
Sbjct 1184 GCTTGAGGAAAAGGCGCTTGACTATCGTCCTAAGATACTTATTTGTGGTGGGAGTTCATA 1243
Query 963 TCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGACAAGTGTGGAGCTGTTTT 1022
||| ||||| ||||| || | ||| |||| || ||||||||||| ||||||||||||||
Sbjct 1244 TCCGAGGGACTGGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTT 1303
Query 1023 GATGTGTGATATGGCTCATATAAGCGGGCTTGTTGC-GACTAAGGAATGTTCAAATCCAT 1081
||||| ||| ||||| || || || || ||||| || | | |||||| || |||||||||
Sbjct 1304 GATGTTTGACATGGCACAGATTAGTGGTCTTGTCGCTGCC-AAGGAAAGTCCAAATCCAT 1362
Query 1082 TTGATCACTGTGACATAGTTACCTCCACTACCCACAAAGG-TCTACGTGGTCCTAGAGGA 1140
| ||| | || || || |||||||| || || ||||| | ||| ||||| ||||| ||
Sbjct 1363 TCGATTATTGCGATATTGTTACCTCAACAACACACAA-GTCTCTCCGTGGCCCTAGGGGC 1421
Query 1141 GGTATCATCTTCTACAGGAGAGGCCCAAAGAT-AAGAAAGCAGGGCCTTCA-CTCAAGCC 1198
|| ||||| || |||| ||||||| ||| ||||| ||| || | | || || |
Sbjct 1422 GGCATCATATTTTACAAGAGAGGCTTGAAGCCCAAGAA-GCAAAGCATAAATCTTAATC- 1479
Query 1199 ATTCTGACA-C--T-TCCACGCATTACGATTTAGAGGAAAAGATCAACTTTGCTGTTTTT 1254
| | ||| | | | |||| | || ||||| || ||||| ||||||||| |||| |||
Sbjct 1480 ACTGTGAGAGCAATATCCA-GTAT---GATTTTGAAGAAAAAATCAACTTTTCTGTCTTT 1535
Query 1255 CCATCGCTACAAGGAGGTCCACACAACAACCATATCGCAGCTCTTGCCATTGCCTTGAAA 1314
|||||| | ||||| || || ||||| |||||||| || ||||| ||||||||| | ||
Sbjct 1536 CCATCGTTGCAAGGGGGGCCTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAG 1595
Query 1315 CAAGTGGCTACTCCAGAGTACAAAGCTT-ACATACAACAGATGAAGAAAAACGCCCAAG- 1372
|| | ||| | ||||||||||| |||| |||| | |||| | || ||||| || |||
Sbjct 1596 CAGGCCGCTTCACCAGAGTACAA-GCTTTACATGCGACAGGTCAAAAAAAATGCT-AAGG 1653
Query 1373 CTTTAGCAGCAGCTCTGCTTAGAAGAAAATGCA-GACTGGTTACAGGTGGCACAGACAAC 1431
|||||||| | ||| || | || ||||| |||| | ||| | ||||||||||| || ||
Sbjct 1654 CTTTAGCATCTGCTTTGATAAGCAGAAAGTGCAAG-CTGATAACAGGTGGCACCGATAAT 1712
Query 1432 CATTTG-TTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAAAGT 1490
|||||| || || |||||||| |||||| ||||||| ||||| || || || ||||||||
Sbjct 1713 CATTTGCTT-CTCTGGGATCTGACTCCTTTGGGCTTGACAGGCAAGGTGTATGAGAAAGT 1771
Query 1491 GTGCGAGATGTGCCATATAACCTTAAACAAGACTG-CTATATTCGGGGACAATGGTACAA 1549
||||||||||||||||| || | ||||| | || | || ||| | || || ||| |
Sbjct 1772 TTGCGAGATGTGCCATATCACGGTCAACAA-AGTGGCCATTTTCAGCGAAAACGGTGTTA 1830
Query 1550 TATCTCCTGGAGGTGTAAGAATAGGGACACCTGCGATGACAACCCGAGGCTGTATAGAGT 1609
| || |||||||| || |||||||| | || || ||||| | |||| ||| ||||
Sbjct 1831 TTTCCCCTGGAGGAGTGAGAATAGGCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAAC 1890
Query 1610 CTGA-TTTCGAGACAATGGCGGATTTTCTGATAAAG-GCGGCTCAGATAACGAGTGCGTT 1667
| || ||| ||||||||||| |||||||| ||| || || ||||||||| | ||||| |
Sbjct 1891 CAGAATTT-GAGACAATGGCTGATTTTCT-ATATAGAGCTGCTCAGATAGCTAGTGC-T- 1946
Query 1668 GCAGAGAGAG--CATGGGAAGTCACACAAGGAGTTTG-TGAAAAGT-T-TATGCACCAAC 1722
||| | || | || ||||||| || ||||| | | ||||| | ||| |||
Sbjct 1947 GCACAAAGGGAACACGGGAAGTTGCAAAAGGAACC-GCTCAAAAGCATCTAT-CACTGT- 2003
Query 1723 AAAGAAATAT-CTGAGCTTAGAAACCGAGTCGAAGCTTTTGCTT-TGCAGTATG-AGATG 1779
||||| || | | || ||| | |||| |||||||||||||||| | |||| || | |||
Sbjct 2004 AAAGAGAT-TGCAGATCTTCGGAACCAAGTCGAAGCTTTTGCTACT-CAGTTTGCA-ATG 2060
Query 1780 CCTGC 1784
|||||
Sbjct 2061 CCTGC 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90360981000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5