BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922784
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36732.1 | Symbols: CPuORF19 | conserved peptide upstream op... 2019 0.0
AT1G36730.1 | Symbols: | Translation initiation factor IF2/IF5... 2019 0.0
> AT1G36732.1 | Symbols: CPuORF19 | conserved peptide upstream
open reading frame 19 | chr1:13898210-13900831 REVERSE LENGTH=2286
Length=2286
Score = 2019 bits (1093), Expect = 0.0
Identities = 1272/1359 (94%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 8 GTTTGTCAAATCGAAAATGGCTTTGCAAAACATTGGTGCTTCCAACCGCGATGATGCCTT 67
|||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 456 GTTTGTTGAATC-AAGATGGCTTTGCAAAACATTGGTGCCTCCAACCGCGATGATGCCTT 514
Query 68 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 574
Query 128 GACTAATGTGGTCAATATGGTTGAGATCGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 187
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 575 GACTAATGTGGTTAACATGGTTGAGATTGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 634
Query 188 TACTAAGTATTTTGGTTGTGAGCTTGGTGCGCAGTCCAAATTTGATGAGAAGACTGGAAC 247
|||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||| ||
Sbjct 635 TACTAAGTATTTTGGTTGTGAGCTTGGTGCACAGTCTAAGTTTGATGAGAAGAATGGGAC 694
Query 248 CTCGCTGGTGAATGGGTCTCATGACACTTCCAAGCTTGCGGGACTTCT-GGAGAACTTTA 306
|||||| ||||||||| |||||||||||||||| ||||| ||| || | |||||||||||
Sbjct 695 CTCGCTTGTGAATGGGGCTCATGACACTTCCAAACTTGCAGGA-TTATTGGAGAACTTTA 753
Query 307 TCAAAAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAAATACTCATCACTA 366
| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 754 TTAAGAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAGATACTTATCACTA 813
Query 367 AGACGCAGATGCTTCAGTTGAAATGTGCGGCTTGCGGGTTTATCTCGGATGTCGATATGA 426
||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct 814 AGACGCAGATGCTTCAGCTGAAATGTGCGGCTTGTGGGTTTCTCTCGGATGTTGATATGA 873
Query 427 GGGACAAGCTCACGTCGTTCATTCTGAAGAATCCTCCAGAGCAAAAGAAGTCGTCTAAGG 486
|||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 874 GGGACAAGCTAACGTCGTTTATTTTGAAGAATCCTCCAGAGCAGAAGAAGTCGTCTAAGG 933
Query 487 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGGCTCAAAGAAGGTGAAGCAGCTGATG 546
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 934 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGACTCAGAGAAGGTGAAGCAGCTGATG 993
Query 547 AGGAGATGAGGAAACTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 606
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AAGAGATGAGGAAGCTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 1053
Query 607 CTTCGAAAGACAAAGTTTCGAAGAAGAAAGATCATTCCCCACCTCGAAGCCAGTCTGATG 666
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1054 CTTCGAAAGACAAAGTGTCGAAGAAGAAAGATCATTCTCCACCTCGAAGCCTGTCTGATG 1113
Query 667 AAAATGAGCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 726
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AAAATGACCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 1173
Query 727 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTGAGTGCTGTAACAGCTGATATGG 786
||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 1174 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTCAGCGCGGTAACAGCTGAAATGG 1233
Query 787 TGATGCTGTCTACAATTGAAGaaaaaaaGCCAGCAGTTCAGGTGAAGAAGGTACCAGAAG 846
|||||||||||||| |||||||||||||||||| || | |||||||||||| |||||||
Sbjct 1234 TGATGCTGTCTACAGTTGAAGAAAAAAAGCCAGTAGCTGAGGTGAAGAAGGCACCAGAA- 1292
Query 847 CA-GTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTGGTCAAT 905
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1293 CAAGTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTTGTGAAT 1352
Query 906 GAGATAAAGGAGCTTCTGAGCAATGGTTCATCTCCTACACAACTCAAAACAGCCCTAGCT 965
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1353 GAGATAAAGGAGCTTCTGAGCAGTGGTTCATCTCCTACCCAACTCAAAACAGCCCTAGCT 1412
Query 966 TCAAACTCCGCAACCCCCCAGGAGAAAATGGAAGCCCTATTCTCTGCCCTCTTTGGAGGC 1025
|||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1413 TCAAACTCAGCAAACCCCCAGGAGAAAATGGACGCCTTATTCTCTGCCCTCTTTGGAGGC 1472
Query 1026 GCAGGCAAGGGATTCGCCAAAGAAGTGATCAAAAAGAAGAAATATCTCGTGGCCTTGATG 1085
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1473 ACAGGCAAGGGATTCGCAAAAGAGGTGATCAAGAAGAAGAAATATCTCTTGGCCTTGATG 1532
Query 1086 ATGATGCAAGAAGAAGCAGGAGCTCCT-CAGCAGATGGTTTTGCTTAACGGAATAGAATC 1144
||||||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||
Sbjct 1533 ATGATGCAAGAAGAAGCAGGAGCTCCTGC-GCAGATGGGTTTGCTTAATGGAATTGAATC 1591
Query 1145 CTTCTGCACGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1204
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CTTTTGCATGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1651
Query 1205 TTACGATGAAGACCTTTTGGAAGAGGATGTGATTGTTGAATGGTACAATAAAGGCATTAA 1264
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1652 TTACGATGAAGACATTTTGGATGAGGATGTGATTGTTGAATGGTACAATAAAGGTGTCAA 1711
Query 1265 AAGCTCCCCTGTGTTGAAGAATGTTACTCCGTTCATTGAGTGGCTCCAGAACGCCGAGTC 1324
||||||||| || |||||||| || ||||||||||| |||||||||||||| || |||||
Sbjct 1712 AAGCTCCCCGGTTTTGAAGAACGTGACTCCGTTCATCGAGTGGCTCCAGAATGCTGAGTC 1771
Query 1325 TGAGTCCGAGGAAGAGTGATGCAGCT-TTTCTTTTACTT 1362
|||||||||||||||||||||| | | |||||||| |||
Sbjct 1772 TGAGTCCGAGGAAGAGTGATGCTG-TGTTTCTTTTTCTT 1809
> AT1G36730.1 | Symbols: | Translation initiation factor IF2/IF5
| chr1:13898210-13900831 REVERSE LENGTH=2286
Length=2286
Score = 2019 bits (1093), Expect = 0.0
Identities = 1272/1359 (94%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 8 GTTTGTCAAATCGAAAATGGCTTTGCAAAACATTGGTGCTTCCAACCGCGATGATGCCTT 67
|||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 456 GTTTGTTGAATC-AAGATGGCTTTGCAAAACATTGGTGCCTCCAACCGCGATGATGCCTT 514
Query 68 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 574
Query 128 GACTAATGTGGTCAATATGGTTGAGATCGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 187
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 575 GACTAATGTGGTTAACATGGTTGAGATTGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 634
Query 188 TACTAAGTATTTTGGTTGTGAGCTTGGTGCGCAGTCCAAATTTGATGAGAAGACTGGAAC 247
|||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||| ||
Sbjct 635 TACTAAGTATTTTGGTTGTGAGCTTGGTGCACAGTCTAAGTTTGATGAGAAGAATGGGAC 694
Query 248 CTCGCTGGTGAATGGGTCTCATGACACTTCCAAGCTTGCGGGACTTCT-GGAGAACTTTA 306
|||||| ||||||||| |||||||||||||||| ||||| ||| || | |||||||||||
Sbjct 695 CTCGCTTGTGAATGGGGCTCATGACACTTCCAAACTTGCAGGA-TTATTGGAGAACTTTA 753
Query 307 TCAAAAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAAATACTCATCACTA 366
| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 754 TTAAGAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAGATACTTATCACTA 813
Query 367 AGACGCAGATGCTTCAGTTGAAATGTGCGGCTTGCGGGTTTATCTCGGATGTCGATATGA 426
||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct 814 AGACGCAGATGCTTCAGCTGAAATGTGCGGCTTGTGGGTTTCTCTCGGATGTTGATATGA 873
Query 427 GGGACAAGCTCACGTCGTTCATTCTGAAGAATCCTCCAGAGCAAAAGAAGTCGTCTAAGG 486
|||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 874 GGGACAAGCTAACGTCGTTTATTTTGAAGAATCCTCCAGAGCAGAAGAAGTCGTCTAAGG 933
Query 487 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGGCTCAAAGAAGGTGAAGCAGCTGATG 546
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 934 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGACTCAGAGAAGGTGAAGCAGCTGATG 993
Query 547 AGGAGATGAGGAAACTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 606
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AAGAGATGAGGAAGCTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 1053
Query 607 CTTCGAAAGACAAAGTTTCGAAGAAGAAAGATCATTCCCCACCTCGAAGCCAGTCTGATG 666
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1054 CTTCGAAAGACAAAGTGTCGAAGAAGAAAGATCATTCTCCACCTCGAAGCCTGTCTGATG 1113
Query 667 AAAATGAGCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 726
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AAAATGACCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 1173
Query 727 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTGAGTGCTGTAACAGCTGATATGG 786
||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 1174 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTCAGCGCGGTAACAGCTGAAATGG 1233
Query 787 TGATGCTGTCTACAATTGAAGaaaaaaaGCCAGCAGTTCAGGTGAAGAAGGTACCAGAAG 846
|||||||||||||| |||||||||||||||||| || | |||||||||||| |||||||
Sbjct 1234 TGATGCTGTCTACAGTTGAAGAAAAAAAGCCAGTAGCTGAGGTGAAGAAGGCACCAGAA- 1292
Query 847 CA-GTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTGGTCAAT 905
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1293 CAAGTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTTGTGAAT 1352
Query 906 GAGATAAAGGAGCTTCTGAGCAATGGTTCATCTCCTACACAACTCAAAACAGCCCTAGCT 965
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1353 GAGATAAAGGAGCTTCTGAGCAGTGGTTCATCTCCTACCCAACTCAAAACAGCCCTAGCT 1412
Query 966 TCAAACTCCGCAACCCCCCAGGAGAAAATGGAAGCCCTATTCTCTGCCCTCTTTGGAGGC 1025
|||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1413 TCAAACTCAGCAAACCCCCAGGAGAAAATGGACGCCTTATTCTCTGCCCTCTTTGGAGGC 1472
Query 1026 GCAGGCAAGGGATTCGCCAAAGAAGTGATCAAAAAGAAGAAATATCTCGTGGCCTTGATG 1085
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1473 ACAGGCAAGGGATTCGCAAAAGAGGTGATCAAGAAGAAGAAATATCTCTTGGCCTTGATG 1532
Query 1086 ATGATGCAAGAAGAAGCAGGAGCTCCT-CAGCAGATGGTTTTGCTTAACGGAATAGAATC 1144
||||||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||
Sbjct 1533 ATGATGCAAGAAGAAGCAGGAGCTCCTGC-GCAGATGGGTTTGCTTAATGGAATTGAATC 1591
Query 1145 CTTCTGCACGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1204
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CTTTTGCATGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1651
Query 1205 TTACGATGAAGACCTTTTGGAAGAGGATGTGATTGTTGAATGGTACAATAAAGGCATTAA 1264
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1652 TTACGATGAAGACATTTTGGATGAGGATGTGATTGTTGAATGGTACAATAAAGGTGTCAA 1711
Query 1265 AAGCTCCCCTGTGTTGAAGAATGTTACTCCGTTCATTGAGTGGCTCCAGAACGCCGAGTC 1324
||||||||| || |||||||| || ||||||||||| |||||||||||||| || |||||
Sbjct 1712 AAGCTCCCCGGTTTTGAAGAACGTGACTCCGTTCATCGAGTGGCTCCAGAATGCTGAGTC 1771
Query 1325 TGAGTCCGAGGAAGAGTGATGCAGCT-TTTCTTTTACTT 1362
|||||||||||||||||||||| | | |||||||| |||
Sbjct 1772 TGAGTCCGAGGAAGAGTGATGCTG-TGTTTCTTTTTCTT 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5