BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922785

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36732.1 | Symbols: CPuORF19 | conserved peptide upstream op...   243    7e-64
  AT1G36730.1 | Symbols:  | Translation initiation factor IF2/IF5...   243    7e-64


> AT1G36732.1 | Symbols: CPuORF19 | conserved peptide upstream 
open reading frame 19 | chr1:13898210-13900831 REVERSE LENGTH=2286
Length=2286

 Score =  243 bits (131),  Expect = 7e-64
 Identities = 204/235 (87%), Gaps = 22/235 (9%)
 Strand=Plus/Plus

Query  1    GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG  302

Query  61   CTTTTAGGGGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  CTTTTAGGAGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG  362

Query  121  CGTCTTGGATCTTTTGAAGCCTTCAATCGCAACAACACGAGCT-T-TTCCGGTTTTCAGT  178
            ||| ||| |      || |         | | || |||||||| | ||  || |||||||
Sbjct  363  CGTTTTG-AG-----GA-G---------G-A-CATCACGAGCTGTATT--GGATTTCAGT  402

Query  179  TTATGCAACCGAGTGATTATCACTGTCTCTTCTGACATCCCTCGTCTGTTTACGT  233
            ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||
Sbjct  403  TTATGCAACTGAGTGATTATCACTGCCTCTTCTGACATCCCTTGTTTGTTTACGT  457


> AT1G36730.1 | Symbols:  | Translation initiation factor IF2/IF5 
| chr1:13898210-13900831 REVERSE LENGTH=2286
Length=2286

 Score =  243 bits (131),  Expect = 7e-64
 Identities = 204/235 (87%), Gaps = 22/235 (9%)
 Strand=Plus/Plus

Query  1    GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG  302

Query  61   CTTTTAGGGGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  CTTTTAGGAGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG  362

Query  121  CGTCTTGGATCTTTTGAAGCCTTCAATCGCAACAACACGAGCT-T-TTCCGGTTTTCAGT  178
            ||| ||| |      || |         | | || |||||||| | ||  || |||||||
Sbjct  363  CGTTTTG-AG-----GA-G---------G-A-CATCACGAGCTGTATT--GGATTTCAGT  402

Query  179  TTATGCAACCGAGTGATTATCACTGTCTCTTCTGACATCCCTCGTCTGTTTACGT  233
            ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||
Sbjct  403  TTATGCAACTGAGTGATTATCACTGCCTCTTCTGACATCCCTTGTTTGTTTACGT  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10505959541


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5