BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922788
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35930.1 | Symbols: | F-box family protein | chr4:17018929-... 340 3e-93
> AT4G35930.1 | Symbols: | F-box family protein | chr4:17018929-17021060
FORWARD LENGTH=1561
Length=1561
Score = 340 bits (184), Expect = 3e-93
Identities = 234/258 (91%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 58 TTTCAA-TATACAACGGCAGACCGCTCAAGACAGGAAATGTTGAGTGTCATGAGCCCAAT 116
|||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||| |
Sbjct 888 TTTCAATTATACAACACCAGACCGCTCAAGACAGGAAATGTTGAGGGTCATGACCCCAGT 947
Query 117 GCCAATAAATCATTGGCCATTCCATAGCAGAAGACAGGGAAACCCAACAATGGTGTCAAG 176
|||||||||| ||||||||| | ||| || || | |||||||||||||||||||||||
Sbjct 948 TCCAATAAATCGTTGGCCATTTCGTAG-AG--GAGATGGAAACCCAACAATGGTGTCAAG 1004
Query 177 CCCACATACCCATAAAGCACCAAAACATGCACCTCGTCCACCCTTTCGAACCAAACTCGC 236
||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||
Sbjct 1005 CCCACATACCCCCAAAGCACCAAAACATGCTCCTAGACCACCCTCTCGAACCAAACTCGC 1064
Query 237 AGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCGTTTCCTTCATGATG 296
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1065 GGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCATTTCCTTCAAGATG 1124
Query 297 CATCGTTCCTTCTGTTCT 314
||||||||||||||||||
Sbjct 1125 CATCGTTCCTTCTGTTCT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14577647210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5