BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922801
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21920.1 | Symbols: | Histone H3 K4-specific methyltransfer... 363 3e-99
> AT1G21920.1 | Symbols: | Histone H3 K4-specific methyltransferase
SET7/9 family protein | chr1:7704255-7706140 REVERSE LENGTH=1727
Length=1727
Score = 363 bits (196), Expect = 3e-99
Identities = 486/622 (78%), Gaps = 36/622 (6%)
Strand=Plus/Plus
Query 395 ATCAAAGCCGGTTCAATGGTTCATC-G-G-CGAATCAAGAACC---G-A-AACCCACATC 446
|||||| ||||| ||||||| |||| | | ||| |||| |||| | | || | |||
Sbjct 703 ATCAAAACCGGTACAATGGTACATCGGAGACGATTCAA-AACCGGAGAAGAAGGTA-ATC 760
Query 447 AAGAAACTCCCTAGAGAAACAGTTGAGTAT-TACAATAATAGCGATTTCTACGAAGGAGA 505
|||| | || || |||| |||| | | | |||| |||| | |||||||||||||| ||
Sbjct 761 AAGAGATTCGTTAAAGAAGGAGTTCAAT-TCTACAGTAATGGAGATTTCTACGAAGGTGA 819
Query 506 GTTTCACAAAGGTAAGTGTAATGGAAGTGGAATTTACTATTACTTCATGAAAGGTA-AAT 564
||| ||||||| |||||||| |||||||| | || || || ||| ||| ||| | |
Sbjct 820 ATTTAACAAAGGGAAGTGTAACGGAAGTGGTGTGTATTACTATTTCGTGAGAGG-ACGTT 878
Query 565 ATGAAGGTGATTGGATTGATGGAAGATACGATGGGT-TTGGGATTGAGAGTTGGGCTAGA 623
||||||| |||||| | ||||| ||||| ||| ||| ||||||||||||||||||||||
Sbjct 879 ATGAAGGAGATTGGCTAGATGGGAGATATGAT-GGTCATGGGATTGAGAGTTGGGCTAGA 937
Query 624 GGAAGTA-AGTACAAAGGACAATATAAACAAGGATCA-AGACATGGACATGGTGTTTACA 681
||||||| | || ||||| ||||||| ||||| || |||||||| ||||||||| |
Sbjct 938 GGAAGTAGA-TATAAAGGTCAATATAGGCAAGG-TCTTAGACATGGTTTTGGTGTTTATA 995
Query 682 GGTTTTACACTGGAGATTCTTATTCTGGAGAATGGTGTAACGGACAGAGTCATGGTGTTG 741
| || |||||||| |||| |||| |||| || |||| ||| || || || |||||| |||
Sbjct 996 GATTCTACACTGGTGATTGTTATGCTGGTGAGTGGTTTAATGGTCAAAGCCATGGTTTTG 1055
Query 742 GTGTTCAGA-CATGTGCTGATGGTAGCTGTTACGTTGGAGAGTTCAA-ATTTGGTGTCAA 799
||||||| | | ||| |||||||||||| |||| |||| |||| | | ||||||||| ||
Sbjct 1056 GTGTTCA-ATCTTGTTCTGATGGTAGCTCTTACCTTGGTGAGT-CTAGATTTGGTGTTAA 1113
Query 800 ACATGGCCTTGGC-CGTTACCATTTTAGAAATGGAGATACGTATTCGGGTGAGTATTTTG 858
||||| ||||| | ||||||||| ||||||||||||| |||| | || ||||| ||||
Sbjct 1114 GCATGGTCTTGGTTC-TTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTACTTTG 1172
Query 859 GAGACAAAATGCACGGTTTTGGAGTCTACC-ACTTTGCGAATGGACATTGTTACGAAGGG 917
||||||| || || || ||||| || || | | ||||| |||||||| ||||| |||||
Sbjct 1173 GAGACAAGATTCATGGGTTTGGTGTGTATCGA-TTTGCTAATGGACACTGTTATGAAGGA 1231
Query 918 GCTTGGCACGAGGGTCGTAAACAAGGCTATGGAATG-TATACA--TTTAGGAATAGTG-T 973
|| ||||| || |||||||| ||||| | ||| || | ||| ||||| ||| ||| |
Sbjct 1232 GCATGGCATGAAGGTCGTAAGCAAGGGTTTGG--TGCT-TACTCGTTTAGAAATGGTGAT 1288
Query 974 CACTAAATGTGGTGAATGGGAT 995
|||||| |||||||||||||
Sbjct 1289 G-CTAAATCTGGTGAATGGGAT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5