BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922802
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1... 1363 0.0
> AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731
REVERSE LENGTH=984
Length=984
Score = 1363 bits (738), Expect = 0.0
Identities = 906/987 (92%), Gaps = 11/987 (1%)
Strand=Plus/Plus
Query 22 ATGTCATTGAGTCGGTCC-ATAACACGGACCGATGGTGCATCCAATGGAGCATTTAGGAC 80
||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATGTCATTGAGTCAG-CCAATAACACGGACCGATAGTGCACCCAATGGAGCATTTAGGAC 59
Query 81 TTTTGGTCTCTACTGGTGCTACCATTGTAATCGTATGGTCAGAATTGCATCCTCTAACCC 140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 TTTTGGTCTCTACTGGTGCTACCATTGTGATCGTATGGTCAGAATTGCATCCTCTAACCC 119
Query 141 ATCTGAGATCGCGTGCCCTCGATGCTTGAGACAATTTGTCGTCGAGATTGAAAC-A-A-G 197
||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||| | |
Sbjct 120 ATCAGAGATCGCCTGTCCTCGATGTTTGAGGCAATTTGTCGTTGAGATTGAAACGAGACA 179
Query 198 ACGGCCTCGGTTTACTCTCAATCATGCTGCTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 257
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 180 ACGGCCTCGGTTTACTTTCAACCATGCTACTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 239
Query 258 TCTTCTCGAAGCTCTATCGCTCATGTTTGAGCCTGCAATTATAGGTGGGTTTGGTGCAGA 317
||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct 240 TCTTCTCGAAGCTCTCTCGCTCATGTTTGAGCCTGCAACCATAGGTAGGTTTGGTGCAGA 299
Query 318 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCACA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCGCA 359
Query 378 ACATCGACGACGCCACAGCCTTGACAATGTTAACAATGGTGGTTTGCCTCTACCAAGAAG 437
||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 ACATCGAAGACGACACAGCCTTGACAATGTTAACAATGGTGGTTTACCTCTACCAAGAAG 419
Query 438 AGCATACGTAATTCTCCGACCCAATAATCGGACTAGAGAACTCGGAAACATAATTCCGCC 497
| |||| || |||||||| |||||||||| |||||| |||||||||||||||| ||||
Sbjct 420 AACATATGTTATTCTCCGGCCCAATAATCCGACTAGTCCACTCGGAAACATAATTGCGCC 479
Query 498 ACCAAATCAAGCACCACC-CTGGCATGTGAACTCAAACGATTTCTTTACCGGAGCATCAG 556
|||||||||||||||||| | |||||||||||||| | |||| |||||| |||||||||
Sbjct 480 ACCAAATCAAGCACCACCAC-GGCATGTGAACTCACATGATTACTTTACTGGAGCATCAA 538
Query 557 GCTTAGAGCAGCTGATTGAACAACTAACACAAGATGATAGGCCTGGACCACTGCCTGCAT 616
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 539 GCTTAGAGCAGCTGATTGAACAACTAACACAAGACGATAGGCCTGGACCACCACCTGCGT 598
Query 617 CAGAACCTATCATTGATGCGCTACCATCTGTGAAGATAACACAACAACATCTAACCAACG 676
||||||| | |||| || | |||||||||||||| ||||||| |||||||||||| ||||
Sbjct 599 CAGAACCCACCATTAATTCCCTACCATCTGTGAAAATAACACCACAACATCTAACTAACG 658
Query 677 ACTTGACCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGATGCAACAGAAT 736
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 659 ACATGTCCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGACGCAACGGAAT 718
Query 737 TACCGTGTAAACATATTTACCATAAAGATTGTATAATCCCGTGGCTCAGGCTTCACAATT 796
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 719 TACCATGTAAACATATTTACCATAAAGATTGTATAGTCCCGTGGCTTAGGCTTAACAATT 778
Query 797 CTTGCCCTATCTGTCGCAGTGACCTGCCACCTGTCAACACCGTTGCTGATTCTCGAGAAA 856
||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct 779 CTTGCCCTATCTGCCGCCGTGACCTGCCACTTGTCAACACCGTTGCTGAATCTCGAGAAA 838
Query 857 GGAGCAATCCTACTAGACAAGACATACCTGAAAGAAGGCGTCCAAGGTGGATACAGCTTG 916
|||||||||||| |||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 839 GGAGCAATCCTATTAGACAAGACATGCCTGAAAGAAGGCGTCCAAGGTGGATGCAACTCG 898
Query 917 GGAACATTTGGCCCTTTAGAGCACGATACCAAAGAGTTAGTCCAGAAGAAACAACAAACC 976
| ||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 899 GTAACATTTGGCCATTTAGAGCAAGATACCAAAGGGTTAGTCCAGAAGAAACAGCAAACC 958
Query 977 AGAATCCTCGA-AGTA-CTAGGAGCTA 1001
||||||||||| | || | ||||||||
Sbjct 959 AGAATCCTCGAGA-TAAC-AGGAGCTA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5