BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922802 Length=1022 Score E Sequences producing significant alignments: (Bits) Value AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1... 1363 0.0 > AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731 REVERSE LENGTH=984 Length=984 Score = 1363 bits (738), Expect = 0.0 Identities = 906/987 (92%), Gaps = 11/987 (1%) Strand=Plus/Plus Query 22 ATGTCATTGAGTCGGTCC-ATAACACGGACCGATGGTGCATCCAATGGAGCATTTAGGAC 80 ||||||||||||| | || ||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 ATGTCATTGAGTCAG-CCAATAACACGGACCGATAGTGCACCCAATGGAGCATTTAGGAC 59 Query 81 TTTTGGTCTCTACTGGTGCTACCATTGTAATCGTATGGTCAGAATTGCATCCTCTAACCC 140 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 60 TTTTGGTCTCTACTGGTGCTACCATTGTGATCGTATGGTCAGAATTGCATCCTCTAACCC 119 Query 141 ATCTGAGATCGCGTGCCCTCGATGCTTGAGACAATTTGTCGTCGAGATTGAAAC-A-A-G 197 ||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||| | | Sbjct 120 ATCAGAGATCGCCTGTCCTCGATGTTTGAGGCAATTTGTCGTTGAGATTGAAACGAGACA 179 Query 198 ACGGCCTCGGTTTACTCTCAATCATGCTGCTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 257 |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| Sbjct 180 ACGGCCTCGGTTTACTTTCAACCATGCTACTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 239 Query 258 TCTTCTCGAAGCTCTATCGCTCATGTTTGAGCCTGCAATTATAGGTGGGTTTGGTGCAGA 317 ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| Sbjct 240 TCTTCTCGAAGCTCTCTCGCTCATGTTTGAGCCTGCAACCATAGGTAGGTTTGGTGCAGA 299 Query 318 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCACA 377 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCGCA 359 Query 378 ACATCGACGACGCCACAGCCTTGACAATGTTAACAATGGTGGTTTGCCTCTACCAAGAAG 437 ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 360 ACATCGAAGACGACACAGCCTTGACAATGTTAACAATGGTGGTTTACCTCTACCAAGAAG 419 Query 438 AGCATACGTAATTCTCCGACCCAATAATCGGACTAGAGAACTCGGAAACATAATTCCGCC 497 | |||| || |||||||| |||||||||| |||||| |||||||||||||||| |||| Sbjct 420 AACATATGTTATTCTCCGGCCCAATAATCCGACTAGTCCACTCGGAAACATAATTGCGCC 479 Query 498 ACCAAATCAAGCACCACC-CTGGCATGTGAACTCAAACGATTTCTTTACCGGAGCATCAG 556 |||||||||||||||||| | |||||||||||||| | |||| |||||| ||||||||| Sbjct 480 ACCAAATCAAGCACCACCAC-GGCATGTGAACTCACATGATTACTTTACTGGAGCATCAA 538 Query 557 GCTTAGAGCAGCTGATTGAACAACTAACACAAGATGATAGGCCTGGACCACTGCCTGCAT 616 |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | Sbjct 539 GCTTAGAGCAGCTGATTGAACAACTAACACAAGACGATAGGCCTGGACCACCACCTGCGT 598 Query 617 CAGAACCTATCATTGATGCGCTACCATCTGTGAAGATAACACAACAACATCTAACCAACG 676 ||||||| | |||| || | |||||||||||||| ||||||| |||||||||||| |||| Sbjct 599 CAGAACCCACCATTAATTCCCTACCATCTGTGAAAATAACACCACAACATCTAACTAACG 658 Query 677 ACTTGACCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGATGCAACAGAAT 736 || || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 659 ACATGTCCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGACGCAACGGAAT 718 Query 737 TACCGTGTAAACATATTTACCATAAAGATTGTATAATCCCGTGGCTCAGGCTTCACAATT 796 |||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||| Sbjct 719 TACCATGTAAACATATTTACCATAAAGATTGTATAGTCCCGTGGCTTAGGCTTAACAATT 778 Query 797 CTTGCCCTATCTGTCGCAGTGACCTGCCACCTGTCAACACCGTTGCTGATTCTCGAGAAA 856 ||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 779 CTTGCCCTATCTGCCGCCGTGACCTGCCACTTGTCAACACCGTTGCTGAATCTCGAGAAA 838 Query 857 GGAGCAATCCTACTAGACAAGACATACCTGAAAGAAGGCGTCCAAGGTGGATACAGCTTG 916 |||||||||||| |||||||||||| |||||||||||||||||||||||||| || || | Sbjct 839 GGAGCAATCCTATTAGACAAGACATGCCTGAAAGAAGGCGTCCAAGGTGGATGCAACTCG 898 Query 917 GGAACATTTGGCCCTTTAGAGCACGATACCAAAGAGTTAGTCCAGAAGAAACAACAAACC 976 | ||||||||||| ||||||||| |||||||||| |||||||||||||||||| |||||| Sbjct 899 GTAACATTTGGCCATTTAGAGCAAGATACCAAAGGGTTAGTCCAGAAGAAACAGCAAACC 958 Query 977 AGAATCCTCGA-AGTA-CTAGGAGCTA 1001 ||||||||||| | || | |||||||| Sbjct 959 AGAATCCTCGAGA-TAAC-AGGAGCTA 983 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50083444559 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5