BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922827

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61060.1 | Symbols:  | F-box family protein | chr1:22488548-...   167    7e-41
  AT1G53550.1 | Symbols:  | F-box family protein | chr1:19983411-...   163    9e-40


> AT1G61060.1 | Symbols:  | F-box family protein | chr1:22488548-22489711 
REVERSE LENGTH=804
Length=804

 Score =  167 bits (90),  Expect = 7e-41
 Identities = 138/160 (86%), Gaps = 7/160 (4%)
 Strand=Plus/Plus

Query  80   TGTTGATCTCGTCA-T-C-AATATCTTGTCGAAATTGCCGGTGAAGTCTATAGCTCAGTG  136
            |||||||||| ||| | | || |||||||||||| |||| ||||||||||||||||||||
Sbjct  63   TGTTGATCTCTTCACTGCTAAGATCTTGTCGAAACTGCCAGTGAAGTCTATAGCTCAGTG  122

Query  137  TCGTTGCGTATCGAAGC-ACTGGTCATC-CATTATTCGCCGTCCAAATTACAACATGTTG  194
            |||||||||||| |||| | |||||||| ||  ||||| |||||| ||||||||||||||
Sbjct  123  TCGTTGCGTATCAAAGCTA-TGGTCATCACAA-ATTCGTCGTCCATATTACAACATGTTG  180

Query  195  TTCCCGACCAAGTCTCCGGCTACACCGAGGTTCCTTTTCA  234
            ||||||| || |||||| ||  ||||| || |||||||||
Sbjct  181  TTCCCGATCATGTCTCCAGCCCCACCGCGGATCCTTTTCA  220


> AT1G53550.1 | Symbols:  | F-box family protein | chr1:19983411-19984637 
FORWARD LENGTH=1227
Length=1227

 Score =  163 bits (88),  Expect = 9e-40
 Identities = 139/163 (85%), Gaps = 5/163 (3%)
 Strand=Plus/Plus

Query  62   GCT-CTTTGATCAGATTTCTGTTGATCTCGTCATCAATATCTTGTCGAAATTGCCGGTGA  120
            ||| |||||||| |||| | |||||||||||||||||||||||||||| |||| |  || 
Sbjct  89   GCTACTTTGATCCGATTCCCGTTGATCTCGTCATCAATATCTTGTCGAGATTGTCTCTGG  148

Query  121  AGTCTATAGCTCAG-TGTCGTTGCGTATCGAAGCACTGGTCATCCATTATTCGCCGTCCA  179
            ||| ||||||  || |||||||| |||||||| |  ||||| ||||| ||||||||||||
Sbjct  149  AGTGTATAGCA-AGGTGTCGTTGTGTATCGAAACTGTGGTCGTCCATAATTCGCCGTCCA  207

Query  180  AATTACAAC-ATGTTGTTCCCGACCAAGTCTCCGGCTACACCG  221
            ||||||||| | ||||||||||  ||||||| |||||||||||
Sbjct  208  AATTACAACCA-GTTGTTCCCGGTCAAGTCTTCGGCTACACCG  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5