BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922830

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43040.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   448    2e-125


> AT1G43040.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr1:16184209-16184523 FORWARD LENGTH=315
Length=315

 Score =  448 bits (242),  Expect = 2e-125
 Identities = 291/314 (93%), Gaps = 5/314 (2%)
 Strand=Plus/Plus

Query  21   ATGGTAAAGAAGCTACTATGTTGCGGAGCCAAGAGCTTCTCCCAAAGAGCTAGATTACCG  80
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAGAAGCTACTATGTTGTGGAGCCAAGAGCTTCTCCCAAAGAGCTAGATTACCG  60

Query  81   GAGGAAGGACGAGTCCGAGTTTATGTCGGAAACGACAGAGATACACAATGCAAGTTAGAG  140
            || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GACGAAGGACGAGTCCGAGTTTATGTCGGAAACGATAGAGATACACAATGCAAGTTAGAG  120

Query  141  ATGGATGCTGATTTCTTGACCCACCCATTGTTCGAAGATCTCCTTCGATTATCCGAAGAA  200
            |||||||||||||||||||| || || |||||||| |||||||| || ||||||||||||
Sbjct  121  ATGGATGCTGATTTCTTGACACATCCTTTGTTCGAGGATCTCCTCCGGTTATCCGAAGAA  180

Query  201  GAGTTCGGTCACTCATACGACGGTGCTTTGAGGATCGCCTGCGAGATTCAAGTCTT-CAT  259
            ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | |
Sbjct  181  GAGTTTGGTCACTCATACGACGGTGCTTTAAGGATCGCCTGCGAGATACAAGTTTTTC-T  239

Query  260  GAACTTGATCCATTACCTTAAGTCCACGAGTCATTCTCCTCATTAC-AT-T-GATGCATC  316
             ||||||||||||||||||||||||||||||||| ||||||||||  || | ||||||||
Sbjct  240  AAACTTGATCCATTACCTTAAGTCCACGAGTCATGCTCCTCATTATTATATTGATGCATC  299

Query  317  TCATTATCTTCATT  330
            |||||||||| |||
Sbjct  300  TCATTATCTTTATT  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16538089421


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5