BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922837

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding prot...   187    3e-47


> AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding protein 
3 | chr1:16275108-16278624 REVERSE LENGTH=1753
Length=1753

 Score =  187 bits (101),  Expect = 3e-47
 Identities = 163/190 (86%), Gaps = 15/190 (8%)
 Strand=Plus/Minus

Query  34    AACAATATTA-CCATCTACCACTACGCGTCTCTCGACCATTTTCTTTCTTATGTCTTTAT  92
             |||| |||||  || | ||||||||   | |||| |||||||| ||||||||||||||||
Sbjct  1693  AACACTATTATACAACCACCACTACAATTGTCTCTACCATTTTTTTTCTTATGTCTTTAT  1634

Query  93    TACCATTAAATGTTAAGCCCATGAAATCAAGACAAACAATTAAAACCAACACGTTGAAAA  152
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1633  TACCATTAAATGTTAAGCCCATGAAATCAAGACAAACAATTAAAACCAACACGTTAAAAA  1574

Query  153   Gaaaaaa-aGAGAG--CAGAA----GAGTA-----TT--AAGTTAAAAGCAACATACATT  198
             ||||||| ||||||  |||||    ||| |     ||  |||||||||||||||||||||
Sbjct  1573  GAAAAAACAGAGAGAACAGAACAAAGAGCAGAGAGTTTTAAGTTAAAAGCAACATACATT  1514

Query  199   CATTAATCCT  208
             ||||||||||
Sbjct  1513  CATTAATCCT  1504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9305749935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5