BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922840
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43560.1 | Symbols: Aty2, ty2 | thioredoxin Y2 | chr1:163980... 658 0.0
> AT1G43560.1 | Symbols: Aty2, ty2 | thioredoxin Y2 | chr1:16398099-16399878
REVERSE LENGTH=814
Length=814
Score = 658 bits (356), Expect = 0.0
Identities = 500/564 (89%), Gaps = 31/564 (5%)
Strand=Plus/Plus
Query 13 GAAGCTTCTTCAATGGCGATTTCTCTCTCAACCTCATATACCTATCCACGTTTTTCGCCG 72
||||||||||||||||||||||||||| | ||| | |||| || |||| ||||| | |||
Sbjct 39 GAAGCTTCTTCAATGGCGATTTCTCTCGCCACCGCCTATATCTCTCCATGTTTTACACCG 98
Query 73 GAATCGCCTAATTCCGTTTCGCCATCACGAACGCTATCTTCTCTTTCCTCCGTACGCTTA 132
|||||| ||||||||| ||| |||||||| | | |||||||||||||||| |||
Sbjct 99 GAATCGTCTAATTCCGCTTCACCATCACG-A----A----CTCTTTCCTCCGTACGATTA 149
Query 133 CCGGCTCAAATTCGCCGATTCGGAATCCGCCACGAGAGTGTTCAATCGCCGTCGTCGTCG 192
|| |||| ||||||||| | | || || ||||||||||||||||| | |||
Sbjct 150 CCTTCTCAGATTCGCCGA-T-----T-CG----GA-AGTGTTCAATCGCCGTC-T--TCG 194
Query 193 ACTAATCGCTTCGCTCCACTCACTGT--TAG-AGCAAAGAAGCAAACTTTCAACTCTTTT 249
||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 195 TCTACTCGCTTCGCTCCACTCACTGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTT 254
Query 250 GATGATCTGTTGCAGAATTCTGATAAACCAT-TACTAGTAGACTTCTATGCCACTTGGTG 308
|||||| |||||||||| ||||||||||| | |||| |||||||||||||| ||||||||
Sbjct 255 GATGATTTGTTGCAGAACTCTGATAAACC-TGTACTTGTAGACTTCTATGCTACTTGGTG 313
Query 309 TGGTCCCTGCCAGCTTATGGTACCTATACTCAACGAAGTGAGTGAAACTCTGAAAGATA- 367
|||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 314 TGGTCCATGTCAGCTTATGGTACCTATACTCAATGAAGTGAGTGAAACACTGAAAGATAT 373
Query 368 AGATTGCAGTTGTGAAAATCGATACTGAAAAGTACCCAAGTCTTGCTAACAAATACCAGA 427
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 374 A-ATTGCAGTTGTGAAAATTGATACTGAGAAGTACCCAAGTCTTGCTAACAAATACCAGA 432
Query 428 TTGAGGCTTTACCCACATTCATCTTATTCAAAGACGGCAAACTCTGGGATCGTTTCGAGG 487
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 433 TTGAGGCTTTGCCCACATTCATCTTATTCAAAGACGGCAAACTCTGGGACCGTTTCGAGG 492
Query 488 GTGCCTTGCCAGCGAACCAACTCGTTGAACGTATTGAGAATTCTTTGCAAGTGAAACAAT 547
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 493 GTGCCTTGCCAGCGAACCAACTCGTTGAGCGTATTGAGAATTCTTTGCAAGTGAAACAGT 552
Query 548 AGGTTTGAGAAACCAAGAAAACTT 571
||||||||||||||||||||||||
Sbjct 553 AGGTTTGAGAAACCAAGAAAACTT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5