BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922848
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 | ch... 643 0.0
> AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 |
chr1:16439435-16441844 REVERSE LENGTH=1594
Length=1594
Score = 643 bits (348), Expect = 0.0
Identities = 700/858 (82%), Gaps = 72/858 (8%)
Strand=Plus/Plus
Query 296 GAGTTCTCAGGCAAACTCACACGTTT-CTGATAACTCTTTGATTGTGCAGCCTGGGCCTA 354
||||||||||||||||||||| ||| | | | || |||| ||||| |||||||
Sbjct 433 GAGTTCTCAGGCAAACTCACA--TTTCCAG-T--TTCGTTGA---AACAGCCCGGGCCTA 484
Query 355 GGGACGGAACCATACAATGCTT-CATCAAAAGGGACAAGTCTAATATGACTTACCACCTT 413
|||| |||| ||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 485 GGGATGGAATCATACAATG-TTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTT 543
Query 414 TACCTTTCTCTTAGTCCTTCCTTACTTGTTGAAAGTGGAAAGTTTCTTCTCTCGGCAAAG 473
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 544 TACCTTTCTCTTAGTCCTGCCATACTTGTTGAAAGTGGGAAGTTTCTTCTCTCGGCAAAG 603
Query 474 CGCACCCGAAGAGCTACATACATAGAGTACGTGATATCGATGGATGCTGATAACATTTCG 533
||| | || ||||||||||||| |||||| || ||||| |||||||| || ||||||||
Sbjct 604 CGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCA 663
Query 534 CAG-TCAAGCAGCAGTTACATTGGCAAAATGAGGTCTAACTTTCTAGGGACAAAATTTGT 592
|| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 664 -AGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGGACAAAATTTAT 722
Query 593 AATATACGATACAGCGCCTGCGCACAACGGTTGCCAAATAATGTCCTCACCAAGCCGGAG 652
| |||| ||||| || |||||| ||||| || |||| ||| ||||| |||||| ||||||
Sbjct 723 AGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCACCAAACCGGAG 782
Query 653 TCGTAGGTTCAGCTCCAAGAAAGTCTCTCCCAAAGTCCCCTCTGGAAGTTACAACATTGC 712
|||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 783 TCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGTTACAACATTGC 842
Query 713 CCAAGTTACATATGAACTGAACTTGCTTGGAACCCGTGGACCTCGCAAGA-TGCACTGCA 771
||||||||||| || ||||||||||||||||||||||||||||| | || || ||||||
Sbjct 843 TCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTA-GAATGAACTGCA 901
Query 772 TTATGCATTCTAT----TCGT--GCTTTAG--CTC-----TA--G------GCCAACCTG 810
||||||| ||||| || | ||| ||| | | || | |||||||||
Sbjct 902 TTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCTAGCCAACCTG 961
Query 811 AGCTTCTTCAACACTCCTTTGATGAATCTTTCGGCAGCATCGGTTCCTCAAAGATAATCG 870
|| |||| |||| ||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 962 AGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCAAAGATAGTCA 1021
Query 871 ACCACTCGGGGGATTTTAGCAGCGCCCGGTTCTCTGACATTGTTGGATCGCAAGAGGAAG 930
|||||||||| ||||| || | || | | | || | | | | | | |||
Sbjct 1022 ACCACTCGGGAGATTT---CA-C-CC-GA--C-C-GA-A-------A--G-A-G-G-AAG 1057
Query 931 AAGGAAAGGAACGAACTTTGGTGCTTAAAAAC-AAACCGCCGAGGTGGCATGGAAA-GCT 988
||||||||| ||| ||||||| || |||| | |||||||| ||||||| | || | |
Sbjct 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAA-CTAAACCGCCAAGGTGGC-TCCAACCGTT 1115
Query 989 GCGGTGCTGGTGCCTTCACTTCAGAGGGAGAGTGACAGTTGCTTCCGTCAAGAACTTCCA 1048
||| || ||||||||| |||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 1116 GCGATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCA 1175
Query 1049 ATTGATGTCCGCTGCAACGGTTCAACCTGGTCCAGATAGGCAGATAGTGGTGCTGGAGCA 1108
||||||||||||||||||||||| || ||| || | || ||||| || |||||||
Sbjct 1176 GTTGATGTCCGCTGCAACGGTTCAGCCCGGT--AG-T-GG----TAGTGATGGTGGAGCA 1227
Query 1109 TTGACCACGAGGCCATCG 1126
||| | ||||||||||||
Sbjct 1228 TTGGCTACGAGGCCATCG 1245
Score = 292 bits (158), Expect = 4e-78
Identities = 258/304 (85%), Gaps = 15/304 (5%)
Strand=Plus/Plus
Query 4 CTTTGGTATTGGGATAAATGACGTTTCGT-AGCATTGTTCGTGATGTTAGAGATAGTATA 62
|||||||||| ||| ||||| |||||| | || |||||||||||||||||||||| | ||
Sbjct 104 CTTTGGTATTCGGAAAAATGTCGTTTC-TGAGTATTGTTCGTGATGTTAGAGATACTGTA 162
Query 63 GGAAGCTTTTCGAGACGTAGTGTCGAAGTGAGAGTGTCTAATGAGACTAGTAAATCTCAC 122
||||||||||||||||||||| |||| |||||||| ||||||| ||| | | ||| |
Sbjct 163 GGAAGCTTTTCGAGACGTAGTTTCGACGTGAGAGTATCTAATGGGACGACT-CATCAGAG 221
Query 123 G-GTGCAT-T----G-GTTGAGACACATGATCAAGAAGATCTTGTTGTAATCAAGAACAC 175
| || || | | |||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 222 GAGTAAATCTCACGGTGTTGAGGCACAT-AT--TGAAGATCTTATTGTAATCAAGAACAC 278
Query 176 TCGTTGGGCTAATTTGCCAGCTGAGGTGCTACGTGATGTGATGAAAAAGTTGGATGAAAG 235
||||||||||||||| || |||| | | |||| ||||||||||||||||||||||||||
Sbjct 279 TCGTTGGGCTAATTTACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAG 338
Query 236 CGAGAGCACGTGGCCTG-ATCGTAAACAAGTTGTTGCTTGTGCTGGTGTCTGCAAGACAT 294
|||||| || ||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 339 CGAGAGTACTTGGCCTGCA-CGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACAT 397
Query 295 GGAG 298
||||
Sbjct 398 GGAG 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5