BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922851
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43650.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 754 0.0
> AT1G43650.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:16443685-16446852 REVERSE LENGTH=1246
Length=1246
Score = 754 bits (408), Expect = 0.0
Identities = 505/549 (92%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 27 AGATTAGAGACGGTGACGACGTTGAAGAAGTCACACGGAGTGGCCAAAGTCATTGGTTCG 86
||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 393 AGATTAGAGACGGTGAC--C-TTGAAGAAGTCACACGGAGTGGCCAAAGTCACTGGTTCA 449
Query 87 ATGGTTGGAA---T----G--TTAGTGTTTGCTTTTGTGAAAGGGCCAAGTTTGATCAAC 137
|||||||||| | | ||||||||||||||||| ||||||||||||||||| |||
Sbjct 450 ATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCAAGTTTGATAAAC 509
Query 138 CACTATAATAGCAAG-ACCATACCAAACGGCACCGTTCCATCGACCAAAGATTTTGTAAA 196
|||||||| ||| || ||||| |||||||||||||||||||| |||||| ||| ||||||
Sbjct 510 CACTATAACAGC-AGCACCATCCCAAACGGCACCGTTCCATCAACCAAAAATTCTGTAAA 568
Query 197 AGGTTCAATCACAATGCTTGCTGCCAATACTTGCTGGTG-TTGTGGATTATCATGC--AG 253
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 569 AGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATTATCATGCAGAG 628
Query 254 CAAGGTGATGAAGGAATACCCAGCGAAGTTGCGATTGGTAACACTTCAATGCTTATTCAG 313
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 629 CAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAGCACTTCAATGCTTGTTCAG 688
Query 314 TTGCATACAAACCGCAGTTTGGGCAGTCGCGGTGAACAGAAATCCATCAGTATGGAAGAT 373
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 689 TTGCATACAAAGCGCAGTTTGGGCAGTCGCGGTGAACAGAAACCCATCAGTTTGGAAAAT 748
Query 374 CGAATTCGGTTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTGACTGGGCTCAC 433
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 749 CGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTGACTGGACTGAC 808
Query 434 ATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACTGCACTCTATAC 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 809 ATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACTGCACTATACAC 868
Query 494 TCCTTTAGCTCTCATCATTACTTGCATAGTCTCATCTTTCCTTTTTAAGGAAACACTATA 553
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 869 TCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAGGAAACATTTTA 928
Query 554 CCTTGGAAG 562
|||||||||
Sbjct 929 CCTTGGAAG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5