BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922853

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family prot...   233    2e-60


> AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein 
| chr5:24096815-24100557 REVERSE LENGTH=2587
Length=2587

 Score =  233 bits (126),  Expect = 2e-60
 Identities = 151/163 (93%), Gaps = 2/163 (1%)
 Strand=Plus/Plus

Query  760   GGAGATTACATGAGCGATGGCATTGCGGCATTGGATCCTTCCACGCCGTCAAAAACGGAG  819
             |||||||||||||||||||| || ||  |||||||||||||||||||||||||||||| |
Sbjct  1095  GGAGATTACATGAGCGATGGTATAGC--CATTGGATCCTTCCACGCCGTCAAAAACGGGG  1152

Query  820   TGACGGTTGTGTGCTCTGCTGGGAATTCCGATCCTAAGTCTGGAACTGTCTCAAAGGTTG  879
             |||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||||
Sbjct  1153  TGACGGTTGTGTGCTCTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTG  1212

Query  880   CACCATGGATTATTACAGTCGGTGCTAGCTCTATGGATCGGGA  922
             |||||||| |||||||||||||||||||||| |||||||||||
Sbjct  1213  CACCATGGGTTATTACAGTCGGTGCTAGCTCCATGGATCGGGA  1255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53262778245


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5