BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922857
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43650.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1788 0.0
> AT1G43650.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:16443685-16446852 REVERSE LENGTH=1246
Length=1246
Score = 1788 bits (968), Expect = 0.0
Identities = 1039/1074 (97%), Gaps = 1/1074 (0%)
Strand=Plus/Plus
Query 1 AACATACATCA-TATTACACGATGATGATGGAGCACAAAGCCAACATGGCAATGGTGTTT 59
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AACACACATCACTATTACACGATGATGATGGAGCACAAAGCCAACATGGCAATGGTGTTT 77
Query 60 GTACAGATTGTATATGCAGGAATGCCATTGCTCTCTAAAGTGGCTATCTCTCAAGGAACC 119
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 78 GTACAGATTGTATACGCAGGCATGCCATTGCTCTCTAAAGTAGCCATCTCTCAAGGAACC 137
Query 120 AACCCTTTTGTCTTTGTTTTCTATAGACAAGCCTTCGCGGCTCTTGCCTTATCGCCTTTC 179
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 138 AACCCTTTTGTCTTTGTTTTTTATAGACAAGCCTTCGCGGCTCTTGCCTTGTCCCCTTTC 197
Query 180 GCATTCTTCCTTGAAAGCTCCAAGTCCTCTCCTCTATCGTTTGTCTTGTTGCTCAAAATA 239
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 198 GCATTCTTCCTTGAAAGCTCCAAGTCCTCTCCTCTATCGTTTATCTTGCTGCTCAAAATA 257
Query 240 TTCTTTATCTCCTTATGCGGACTCACGCTGAGTCTTAACCTCTACTACGTGGCCATCGAG 299
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 258 TTCTTTATCTCCTTATGCGGACTCACGCTGAGTCTTAATCTCTACTATGTGGCCATCGAG 317
Query 300 AACACCACCGCCACTTTCGCGGCAGCCACCACCAACGCCATCCCCTCTATCACCTTCGTC 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 318 AACACCACCGCCACCTTCGCGGCAGCCACCACCAACGCCATCCCCTCTATCACATTCGTC 377
Query 360 TTGGCTCTCCTATTCAGATTAGAGACGGTGACCTTGAAGAAGTCACACGGAGTGGCCAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTGGCTCTCCTATTCAGATTAGAGACGGTGACCTTGAAGAAGTCACACGGAGTGGCCAAA 437
Query 420 GTCATTGGTTCAATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GTCACTGGTTCAATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCA 497
Query 480 AGTTTGATAAACCACAATAACAGCAGCACCATCCCAAACGGCACCGTTCCATCAACCAAA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AGTTTGATAAACCACTATAACAGCAGCACCATCCCAAACGGCACCGTTCCATCAACCAAA 557
Query 540 AATTCTGTAAAAGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AATTCTGTAAAAGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATT 617
Query 600 ATCATGCAGAGCAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAACAGTACAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 618 ATCATGCAGAGCAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAGCACTTCAA 677
Query 660 TGCTTCTTTAGTTGCATACAAACCGCAGTTTGGGCAGTCGCGGTGAACAGAAGTCCATCA 719
||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 678 TGCTTGTTCAGTTGCATACAAAGCGCAGTTTGGGCAGTCGCGGTGAACAGAAACCCATCA 737
Query 720 GTTTGGAAGATCGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTG 779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTTTGGAAAATCGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTG 797
Query 780 ACTGGCCTCACATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACT 839
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ACTGGACTGACATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACT 857
Query 840 GCACTCTACACTCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAG 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GCACTATACACTCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAG 917
Query 900 GAAACACTTTACCTTGGAAGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTT 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAAACATTTTACCTTGGAAGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTT 977
Query 960 GGTCTATGGGGTAAAACTaaagaagaggaagtgcaaagatatggtgaaaagaaaagccaa 1019
|||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 978 GGTCTATGGGGTAAAACTAAAGAAGAGGAAATACAAAGATATGGTGAAAAGCAAAGCCAA 1037
Query 1020 aaagagactatagaagaagTTATCATCGTCTAGGATTGCATCTCAAAAGGCATC 1073
||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AAAGAAATTATAGAAGAAGTTATCATCGTCTAGGATTGCATCTCAAAAGGCATC 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5