BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922858
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing ... 272 4e-72
> AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing
4 | chr1:824537-826358 FORWARD LENGTH=1264
Length=1264
Score = 272 bits (147), Expect = 4e-72
Identities = 241/286 (84%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 89 TCTGTCATCGTTGCCGACTCCA-TCCCTTTCAACCACAAAGAAGCCTTCTTTAAGGGGCA 147
||||| ||||| ||||||| | |||| ||||||| | || |||||| | ||||| ||
Sbjct 225 TCTGTTATCGTCACCGACTCTATTCCC-GTCAACCATGACGATGCCTTCCTCAAGGGACA 283
Query 148 CGGAACTTCCTTGATCGACGGTGAGTTGCT-GACGACGGTCTGTGGAGTTGT-GATAAAC 205
||||||||| | |||| ||||||||||| | |||||||||||||||| || ||
Sbjct 284 TGGAACTTCCGAGGTCGATGGTGAGTTGCTCG-CGACGGTCTGTGGAGTAGTGGA-GCGT 341
Query 206 GTGGACAAGCTCGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTGGGGAT 265
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 342 GTGGATAAGCTTGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGAT 401
Query 266 ATTGTGGTAGGCCGTGTGATTCAGGTTGGTCAAAGCCGTTGGAAAGTGGAGCTCAACT-C 324
||||||||||||||||| ||| |||||| ||||| ||||||| |||||||||||||| |
Sbjct 402 ATTGTGGTAGGCCGTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTC 461
Query 325 TACTCAAGATGGAATACTGAAGCTTTCTTCCATCAATATGCCTGAT 370
| ||| |||||| |||||| |||||||||||| || |||||||||
Sbjct 462 AA-TCAGGATGGAGTACTGATGCTTTCTTCCATGAACATGCCTGAT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5