BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922860
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43670.1 | Symbols: | Inositol monophosphatase family prote... 1764 0.0
> AT1G43670.1 | Symbols: | Inositol monophosphatase family protein
| chr1:16468044-16470500 FORWARD LENGTH=1319
Length=1319
Score = 1764 bits (955), Expect = 0.0
Identities = 1017/1048 (97%), Gaps = 0/1048 (0%)
Strand=Plus/Plus
Query 17 AAAGATGGATCACGCAGCAGATGCTCACCGTACGGATTTGATGACCATTACAAGATTCGT 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AAAGATGGATCACGCAGCAGATGCTCACCGTACGGATTTGATGACCATTACAAGATTCGT 196
Query 77 GTTGAATGAACAATCAAAGTATCCAGAATCTCGTGGTGATTTCACCATTTTGCTTAGTCA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GTTGAATGAACAATCAAAGTATCCAGAATCTCGTGGTGATTTCACCATTTTGCTTAGTCA 256
Query 137 CATCGTTTTGGGTTGCAAATTCGTTTGCAGTGCTGTTAATAAGGCTGGTTTGGCTAAGTT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CATCGTTTTGGGTTGCAAATTCGTTTGCAGTGCTGTTAATAAGGCTGGTTTGGCTAAGTT 316
Query 197 AATTGGTCTTGCAGGAGAAACAAACATTCAGGGTGAAGAGCAGAAGAAACTTGATGTGCT 256
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 317 AATTGGACTTGCAGGGGAAACAAACATTCAGGGTGAAGAGCAAAAGAAACTTGATGTGCT 376
Query 257 CTCTAATGATGTTTTTGTCAAAGCTCTGGTTAGCAGTGGAAGAACTTCTGTTCTTGTCTC 316
|||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 377 CTCTAATGATGTCTTTGTCAACGCTTTGGTTAGCAGTGGTAGAACTTCTGTTCTTGTCTC 436
Query 317 GGAGGAAGATGAGGAAGCTACGTTTGTTGAGCCATCCAAGCGTGGAAAGTACTGTGTTGT 376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 437 GGAGGAAGATGAGGAAGCTACGTTTGTGGAGCCATCCAAGCGTGGAAAGTACTGTGTTGT 496
Query 377 TTTCGATCCGCTTGATGGATCTTCGAACATTGACTGTGGTGTTTCCATTGGAACAATTTT 436
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 497 TTTTGATCCGCTTGATGGATCTTCAAACATTGACTGTGGTGTTTCCATTGGCACAATTTT 556
Query 437 TGGAATTTACACGTTGGACCACACTGATGAGCCAACCACTGAAGATGTTCTGAAACCTGG 496
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 557 TGGAATTTACACGTTGGACCACACTGATGAGCCAACCACTGCAGATGTTCTGAAACCTGG 616
Query 497 GAATGAAATGGTGGCGGCGGGTTATTGTATGTATGGAAGCTCCTGCATGCTTGTGTTGAG 556
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 617 GAATGAAATGGTGGCTGCAGGTTATTGTATGTACGGAAGCTCCTGCATGCTTGTGTTGAG 676
Query 557 CACTGGAACGGGTGTCCACGGGTTTACCCTCGACCCATCTCTAGGAGAGTTCATTCTAAC 616
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 677 CACTGGAACCGGTGTCCACGGATTTACACTGGACCCATCTCTAGGAGAGTTCATTCTAAC 736
Query 617 TCACCCGGACATTAAGATTCCAAATAAGGGAAACATTTATTCAGTGAATGAAGGCAATGC 676
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 737 TCACCCGGACATTAAGATTCCAAATAAGGGAAACATTTATTCGGTGAATGAAGGCAATGC 796
Query 677 GCAGAACTGGGATGGTCCAACTACAAAGTATGTAGAGAAATGCAAGTTTCCTAAAGATGG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GCAGAACTGGGATGGTCCAACTACAAAGTATGTAGAGAAATGCAAGTTTCCTAAAGATGG 856
Query 737 TTCTCCTGCAAAGTCTCTGAGATACGTTGGAAGTATGGTAGCCGATGTTCATCGCACACT 796
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 857 TTCTCCTGCAAAGTCTCTGAGATACGTAGGAAGTATGGTAGCTGATGTTCATCGTACACT 916
Query 797 ACTTTATGGAGGAATCTTCTTGTACCCGGCTGACAAGAAAAGCCCCAATGGGAAACTGCG 856
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 917 ACTTTATGGAGGAATCTTCTTGTACCCGGCTGACAAGAAAAGCCCCAATGGAAAATTGCG 976
Query 857 TGTCTTGTATGAAGTTTTCCCGATGTCGTTCTTGATGGAGCAAGCCGGAGGTCAGGCCTT 916
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 977 TGTCTTGTATGAAGTTTTCCCGATGTCGTTTTTGATGGAGCAAGCCGGAGGTCAGGCCTT 1036
Query 917 TACGGGAAAGAAAAGGGCGCTAGACCTTGTCCCGGAGAAGATCCATGAGCGTTCTCCGAT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TACGGGAAAGAAAAGGGCGCTAGACCTTGTCCCGGAGAAGATCCATGAGCGTTCTCCGAT 1096
Query 977 ATTTCTTGGTAGCTACGACGATGTAGAGGAGATTAAGGCTCTGTATGCTGAGGAGTAAAA 1036
|||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| ||||
Sbjct 1097 ATTTCTTGGTAGCTACGATGATGTAGAAGAGATTAAAGCTCTCTATGCTGAGGAGGAAAA 1156
Query 1037 GAAGAACTAAGCTTCTCATTCTTCTTTT 1064
||||||||||||||||||||||||||||
Sbjct 1157 GAAGAACTAAGCTTCTCATTCTTCTTTT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5