BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922861

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1...   174    4e-43


> AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase 
E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
Length=1627

 Score =  174 bits (94),  Expect = 4e-43
 Identities = 107/113 (95%), Gaps = 2/113 (2%)
 Strand=Plus/Plus

Query  55   AAGGATTGGAGTTGTATGAAGACATGATACTAGGTAGATCTGTCGAAGACATGTGTGCTC  114
            |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct  368  AAGGATTGGAGTTGTATGAAGATATGATACTAGGTAGATCTTTCGAAGACATGTGTGCTC  427

Query  115  AAATATATTACAGAGAG-AAGATGTTTGGTTTTGTTCACTTGTACAATGGCCA  166
            |||| |||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct  428  AAATGTATTACCGAG-GCAAGATGTTTGGTTTTGTTCACTTGTACAATGGCCA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5