BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922864
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43710.1 | Symbols: emb1075 | Pyridoxal phosphate (PLP)-depe... 1267 0.0
> AT1G43710.1 | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:16486320-16488384
REVERSE LENGTH=1749
Length=1749
Score = 1267 bits (686), Expect = 0.0
Identities = 776/820 (95%), Gaps = 4/820 (0%)
Strand=Plus/Plus
Query 612 GTTGATACGCTTATTTCGGGGGAGATTGATTGTGATGATTTTAGGAAGAAGTTGTTGGCT 671
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 738 GTTGATACGCTTATGTCAGGGGAGATTGATTGTGATGATTTGAGGAAGAAGTTGTTGGCT 797
Query 672 AATAAAGATAAACCGGCCATTCTTAATGTTAACATAGGAACGACGGTTAAAGGAGCTGTT 731
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AATAAAGATAAACCGGCGATTCTTAATGTTAACATAGGAACGACGGTTAAAGGAGCTGTT 857
Query 732 GATGATCTTGACCTTGTAATCAAAACTCTTGAAGAGTGTGGTTTCTCACATGACAGGTTC 791
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 858 GATGATCTTGACCTTGTTATCAAAACTCTTGAAGAGTGTGGTTTCTCACATGATAGGTTC 917
Query 792 TATATTCACTGTGATGGAGCTCTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCA 851
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 918 TATATTCATTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCG 977
Query 852 AAAGTCAC-TTTCAATAAACCGATAGGAAGTGTGAGTGTGTCGGGCCACAAATTTGTAGG 910
||||| || ||| |||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 978 AAAGTGACGTTT-AATAAACCGATAGGGAGTGTGAGTGTATCGGGCCACAAATTTGTCGG 1036
Query 911 GTGTCCAATGCCTTGTGGTGTTCAGATAACAAGAATGGAACACATCAAAGTCCTCTCCAA 970
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1037 GTGTCCAATGCCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAG 1096
Query 971 TAACGTTGAGTACCTCGCTTCGAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGC 1030
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TAACGTTGAGTACCTTGCTTCAAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGC 1156
Query 1031 TCCTTTGTTCCTTTGGTACACCTTAAACAGGAAAGGGTACAAAGGATTCCAGAAAGAAGT 1090
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1157 TCCTTTGTTCCTCTGGTACACCTTAAACAGGAAAGGTTACAAAGGATTCCAGAAAGAAGT 1216
Query 1091 TCAGAAATGCTTGAGAAATGCGCATTACCTCAAAGACAGACTCCGTGAAGCTGGGATCAG 1150
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1217 TCAGAAATGCTTGAGAAACGCGCATTACCTCAAAGACCGACTTCGTGAAGCTGGGATTAG 1276
Query 1151 CGCCATGCTTAATGAGCTTAGCAGCACCGTGGTCTTTGAACGCCCCAAGGATGAAGAATT 1210
||||||||||||||||||||||||||| |||||||||||||| || || |||||||| ||
Sbjct 1277 CGCCATGCTTAATGAGCTTAGCAGCACTGTGGTCTTTGAACGGCCTAAAGATGAAGAGTT 1336
Query 1211 TGTTAGAAGGTGGCAGCTCGCTTGCCAAGGCGATATTGCTCATGTGGTTGTTATGCCAAG 1270
|||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1337 TGTTAGAAGGTGGCAGCTTGCTTGCCAAGGTGATATAGCTCATGTGGTGGTTATGCCAAG 1396
Query 1271 TGTTACAATCGAGAAGCTCGATAATTTCCTGAAAGACCTTGTCAAACACAGATC-AGTCT 1329
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1397 TGTTACAATCGAGAAGCTTGATAATTTCCTGAAAGACCTTGTCAAACACAGATTGA-TCT 1455
Query 1330 GGTACGAGGACGGATCTCAGCCTCCGTGCCTTGCATCAGAGGTAGGAACCAACAACTGCA 1389
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1456 GGTACGAGGATGGATCTCAGCCTCCTTGCCTTGCATCGGAGGTAGGAACCAACAACTGCA 1515
Query 1390 TCTGTCCAGCTCACAAGTGACGGCACCATTTTTCATATGT 1429
||||||||||||||||||||||||||||||| |||| |||
Sbjct 1516 TCTGTCCAGCTCACAAGTGACGGCACCATTTCTCATTTGT 1555
Score = 857 bits (464), Expect = 0.0
Identities = 577/628 (92%), Gaps = 21/628 (3%)
Strand=Plus/Plus
Query 4 CAGATTCCTTT---ATTACAATGGTTGGAGCTTTCGAATCTGATCAATCCCTAACAATGG 60
||||||||||| | |||||||||||| |||| |||||||||||| | || ||||||
Sbjct 67 CAGATTCCTTTAAAACAACAATGGTTGGATCTTTGGAATCTGATCAAACTCTTTCAATGG 126
Query 61 CCAACTTAATCGAAAAAATCCACATCTTATCTGACGACTTCGATCCAACCGCTGTACTCA 120
||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 127 CCACCTTAATCGAAAAACTCGACATCTTATCTGACGACTTCGATCCAACCGCCGTAGTCA 186
Query 121 CCGAACCGTTACCT--T-C--T--C----CG-A-CGGAGCT--T-AA--CGGAGGAGGAG 162
|||||||||||||| | | | | | | ||||||| | || ||||||||||
Sbjct 187 CCGAACCGTTACCTCCTCCGGTAACTAATGGAATCGGAGCTGATAAAGGAGGAGGAGGAG 246
Query 163 GAGACAGAGAAATGGTTCTCGGTAGGAATATACACACGACGTCACTTGCTGTTACGGAAC 222
|||| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 247 GAGAAAGAGAGATGGTTCTCGGTAGGAATATACACACAACGTCACTCGCTGTAACGGAAC 306
Query 223 CTGAGGTTAACGATGAATTCACCGGAGATAAAGAAGCTTATATGGCTAGTGTTCTTGCTC 282
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CGGAGGTTAACGATGAATTCACCGGAGATAAAGAAGCTTATATGGCTAGTGTTCTTGCTC 366
Query 283 GTTACCGGAAAACTTTGGTTGAACGAACCAAATTTCATTTAGGTTATCCTTATAATTTGG 342
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 367 GTTACCGGAAAACTTTGGTTGAACGAACCAAAAACCATTTAGGTTATCCTTATAACTTGG 426
Query 343 ATTTCGACTATGGTGCGCTTGGTCAGTTACAACATTTTTCGATTAATAATCTTGGAGATC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATTTCGACTATGGTGCGCTTGGTCAGTTACAACATTTTTCGATTAATAATCTTGGAGATC 486
Query 403 CGTTTATTGAGAGTAACTATGGTGTACACTCAAGACCTTTTGAAGTTGGTGTGTTGGATT 462
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CGTTTATTGAAAGTAACTATGGTGTACACTCAAGACCTTTTGAAGTTGGTGTGTTGGATT 546
Query 463 GGTTTGCTCGTCTTTGGGAGATTGAGAGAGATGATTATTGGGGTTACATTACCAATTGTG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GGTTTGCTCGTCTTTGGGAGATTGAGAGAGATGATTATTGGGGTTACATTACCAATTGTG 606
Query 523 GTACTGAAGGCAACCTTCATGGCATTTTAGTTGGGAGGGAGATGTTTCCTGATGGGATTT 582
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 607 GTACTGAAGGCAACCTTCATGGCATTTTAGTCGGGAGGGAGATGTTTCCGGATGGGATAT 666
Query 583 TGTATGCGTCGCGGGAATCGCATTACTC 610
||||||||||||| ||||||||||||||
Sbjct 667 TGTATGCGTCGCGTGAATCGCATTACTC 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5