BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922868
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43781.1 | Symbols: | Pseudogene of AT1G53790; F-box family... 599 1e-170
AT1G53790.2 | Symbols: | F-box and associated interaction doma... 433 1e-120
> AT1G43781.1 | Symbols: | Pseudogene of AT1G53790; F-box family
protein | chr1:16568967-16575486 FORWARD LENGTH=1122
Length=1122
Score = 599 bits (324), Expect = 1e-170
Identities = 395/427 (93%), Gaps = 14/427 (3%)
Strand=Plus/Plus
Query 300 TCTGAGAAGTTTAGTTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TCTGAGAAGTTTAGGTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 754
Query 360 TTGATCAACTACAAGGGTAAATTAGGTGCACTTCAGTTTACATTTTTGTGTCAAAGACAA 419
||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 755 TTGATCAACTACAAGGGTAAATTAGATGCACTTCAGTTTACATTTTTGGGTCGAAGACAA 814
Query 420 CTTGAGTTTTGGATTCTAGAAGATGCTGAGAAATATATATGGTCCAAAGATATC----TA 475
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 815 CTTGAGTTTTGGATTCTAGAAGATGCTGAGAAATGTATATGGTCCAAAGATATCTATATA 874
Query 476 --C---ATATTGCCTTCTTTGTGGGACAACATAGTTCAACGTGCCGAGTTATTCATTGTT 530
| ||||||||||||| |||||| |||||||||||| | |||||||||||||||||
Sbjct 875 TTCTAGATATTGCCTTCTTGGTGGGATAACATAGTTCAAAATACCGAGTTATTCATTGTT 934
Query 531 GGAATGACTGGTAGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAGTA---GAACCATGT 587
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 935 GGAATGACTGGTAGAGGTGAAGTTGTGTTGTCACCGTACTGTCTAGTACTAGAACCATGT 994
Query 588 TACATTTATTACTTCAACCTTGAGAGCTGGAGTTTCACAAGAGTTCAAATACAAGGTCTT 647
|||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 995 TACATTGATTAATTCAACCTCGAGAGGAGGAGTTTCACAAGAGTTCAAATACAAGGTCTT 1054
Query 648 GAAGTG-TT-TAAGCGTACGAGAGTTTACACCTCTCTAGACTATGCTGAGAATTTGAAAC 705
|||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1055 GAAGTGCTTATAAGGGTACGAGAGTTTACACTTCTCTAGACTATGCTGAGAATTTGAAAC 1114
Query 706 TTATGTA 712
|||||||
Sbjct 1115 TTATGTA 1121
Score = 372 bits (201), Expect = 3e-102
Identities = 270/302 (89%), Gaps = 10/302 (3%)
Strand=Plus/Plus
Query 3 GATAAGGGAAGTCTAGATACTATGGTTATTTATAACCCGGTCACAGGAGAGTCCT-TACC 61
||||||||||||||||||||||| |||||||||||||| |||| ||||||| || || |
Sbjct 344 GATAAGGGAAGTCTAGATACTATCATTATTTATAACCCGATCACGGGAGAGT-CTCTATC 402
Query 62 CTTACCCAAAGTGGAATTGAAGAG-TGTTAATACTGTGAC-AAGACCTTATTTAGGGTAT 119
|||||||||| ||||||||||||| | || ||| |||||| ||| ||||||||||| |||
Sbjct 403 CTTACCCAAACTGGAATTGAAGAGAT-TTCATATTGTGACAAAG-CCTTATTTAGGATAT 460
Query 120 GATCCGATTGACAAACAGTTAAAAGTATTGTGCATCAAGTTCGGTGGAATCCCGGA-TAT 178
||||||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||
Sbjct 461 GATCCGATTGAGAAACAGTTAAAAGTATTGTGCATCAAGTTTAGTGAAATCCC-GAGTAC 519
Query 179 TTTTGTTGATCATCAAGTGTTGACATTGAATAATGGAAAACATTTATGGAGAACAATCCA 238
| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 520 TGTTGATGATCATCAAGTGTTGACATTGAAGAATGGAAAACATTTATGGAGAACAATTCA 579
Query 239 ATGCAAACCCCATTATCCTAAATCCAATGGAATATGCATAGATGGTGTTT-TGTATTATA 297
|| |||||||||||||||||||| |||||||||||| |||||||| ||| |||||||||
Sbjct 580 ATACAAACCCCATTATCCTAAATGTAATGGAATATGCTTAGATGGT-TTTCTGTATTATA 638
Query 298 CA 299
||
Sbjct 639 CA 640
> AT1G53790.2 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20079081-20081455 REVERSE LENGTH=1852
Length=1852
Score = 433 bits (234), Expect = 1e-120
Identities = 357/416 (86%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 300 TCTGAGAAGTTTAGTTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 359
||||| |||||||| ||||| ||||| ||| || ||||||||||| | | |||||||||
Sbjct 983 TCTGAAAAGTTTAGCTTTATCAACATACATGTATTCATGTTGATGAATGACTCTTGTACT 1042
Query 360 TTGATCAACTACAAGGGTAAATTAGGTGCACTTCAGTTTACATTTTTGTGT-CAAAGACA 418
| |||||||||||||||||| ||||||||||||||||||||| ||||| | |||| ||
Sbjct 1043 CTAATCAACTACAAGGGTAAACTAGGTGCACTTCAGTTTACATGTTTGTCTCCAAA-ACG 1101
Query 419 ACTTGA-GTTTTGGATTCTAG-AAGATGCTGAGAAATATATATGGTCCAAA-GATATCTA 475
||| | ||| ||| |||||| || ||||||||||| |||||||| ||||| | ||||||
Sbjct 1102 TCTT-AGGTTCTGGGTTCTAGTAA-ATGCTGAGAAAAATATATGGACCAAATG-TATCTA 1158
Query 476 CATATTGCCTTCTTTGTGGGACAACATAGTTCAACGTGCCGAGTTATTCATTGTTGGAAT 535
||||||| |||||||| ||||| ||||||| | | | |||||| ||||||||||||
Sbjct 1159 TGCATTGCCTCCTTTGTGGAACAACTTAGTTCAGCATACGGAGTTAGCCATTGTTGGAAT 1218
Query 536 GACTGGTAGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAGTAGAAC-CATGTTACATTT 594
||||| | |||||||||||||||||||||||||||||||| || | | ||| ||||||||
Sbjct 1219 GACTGATGGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAATATA-CGCATTTTACATTT 1277
Query 595 ATTACTTCAACCTTGAGAGCTGGAGTTTCACAAGAGTTCAAATACAAGGTCTTGAAGTGT 654
|||||||||||||||||||| |||| ||||||||||||||||||||| | ||||| |||
Sbjct 1278 ATTACTTCAACCTTGAGAGCAAGAGTCTCACAAGAGTTCAAATACAAGATGTTGAAATGT 1337
Query 655 TTAAGCGTACGAGAGTTTACACCTCTCTAGACTATGCTGAGAATTTGAAACTTATG 710
| || ||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 1338 TCAAACGTACGAGAGTTTACACCTCTCTAGGCTATGTTGAGAATTTTAAACTTATG 1393
Score = 342 bits (185), Expect = 2e-93
Identities = 264/302 (87%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 5 TAAGGGAAGTCTAGATACTATGGTTATTTATAACCCGGTCACAGGAGAGTCCTTACCCTT 64
|||| ||| ||||||||||||||| |||| |||||| ||||| ||||||||| || ||||
Sbjct 634 TAAGAGAAATCTAGATACTATGGTAATTTGTAACCCAGTCACGGGAGAGTCCGTATCCTT 693
Query 65 ACCCAAAGTGGAATTGAAGAGTGTTAATACTGTGACAAGACCTTATTTAGGGTATGATCC 124
||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 694 ACCCAAAGTGGAACTGAAGAGTATTAATACTGAGACAAGACCTTATTTAGGATATGATCC 753
Query 125 GAT-TGACAAACAGTTAAAAGTATTGTGCATCAAGTTC-GGTGGA-ATCCCGGATATTTT 181
| | | ||||||| |||| ||||||||||||||| || | | || ||||| ||| |
Sbjct 754 GGTCCG-CAAACAGCTAAAGGTATTGTGCATCAAG-TCTGAT-GATATCCCAAATACGTG 810
Query 182 TGTTGATCATCAAGTGTTGACATTGAATAATGGAAAACATTTATGGAGAACAATCCAATG 241
|| ||| |||||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 811 TGATGAGCATCAAGTTTTGACATTGGAGAATGGAAACCATTTATGGAGAACAATCCAATG 870
Query 242 CAAACCCCATTATCCTAAATCCAATGGAATATGCATAGATGGTGTTTTGTATTATACATC 301
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 871 CAAACCCCATTATCCTAAATCTGATGGAATATGCATAGATGGTATTTTGTATTATACAGC 930
Query 302 TG 303
||
Sbjct 931 TG 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5