BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922872

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of p...   154    6e-37


> AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of 
polycomb protein | chr5:20823736-20829564 FORWARD LENGTH=2427
Length=2427

 Score =  154 bits (83),  Expect = 6e-37
 Identities = 137/161 (85%), Gaps = 12/161 (7%)
 Strand=Plus/Plus

Query  78    AAGAGCCGAATACCACCTGGAAAGCATTATGAACGAAATGGGGGTGCTGAGTCTAATCAA  137
             ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||  ||||
Sbjct  1608  AAGAGCCGAATACCACCTGGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAA  1667

Query  138   AGAGTTCCTCCTG-CA-GA--CGT--A--C----AATCATGTGGTGATCCAGATTCCGTG  185
             ||||||||||||| || ||  | |  |  |    |||||||||| ||||||||||  |||
Sbjct  1668  AGAGTTCCTCCTGGCACGAGTCCTGCAGACGTGCAATCATGTGGGGATCCAGATTATGTG  1727

Query  186   CAGACAATAGCTGGAAGTACAATGTTGCAATTTGCAAAAAC  226
             ||| | ||||||||||||||||||||||| |||||||||||
Sbjct  1728  CAGTCGATAGCTGGAAGTACAATGTTGCAGTTTGCAAAAAC  1768


 Score =  132 bits (71),  Expect = 3e-30
 Identities = 77/80 (96%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  255   ATGCTCGATGATTTCGTTGATGTGACCAAGGATGAGAAGCAGATGATGCACATGTGGAAC  314
             |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct  1938  ATGCTCGATGATTTCGTTGATGTGACTAAAGATGAGAAACAGATGATGCACATGTGGAAC  1997

Query  315   TCGTTTGTGAGGAAGCAGCG  334
             ||||||||||||||||||||
Sbjct  1998  TCGTTTGTGAGGAAGCAGCG  2017


 Score = 54.7 bits (29),  Expect = 6e-07
 Identities = 33/35 (94%), Gaps = 0/35 (0%)
 Strand=Plus/Plus

Query  334   GGTGCTGGAGAGTGTTTATGGTGAAACTATGAAAC  368
             |||||||||||||||||||||||||||| || |||
Sbjct  2107  GGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAAC  2141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5