BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922872 Length=385 Score E Sequences producing significant alignments: (Bits) Value AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of p... 154 6e-37 > AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20823736-20829564 FORWARD LENGTH=2427 Length=2427 Score = 154 bits (83), Expect = 6e-37 Identities = 137/161 (85%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 78 AAGAGCCGAATACCACCTGGAAAGCATTATGAACGAAATGGGGGTGCTGAGTCTAATCAA 137 ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||| Sbjct 1608 AAGAGCCGAATACCACCTGGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAA 1667 Query 138 AGAGTTCCTCCTG-CA-GA--CGT--A--C----AATCATGTGGTGATCCAGATTCCGTG 185 ||||||||||||| || || | | | | |||||||||| |||||||||| ||| Sbjct 1668 AGAGTTCCTCCTGGCACGAGTCCTGCAGACGTGCAATCATGTGGGGATCCAGATTATGTG 1727 Query 186 CAGACAATAGCTGGAAGTACAATGTTGCAATTTGCAAAAAC 226 ||| | ||||||||||||||||||||||| ||||||||||| Sbjct 1728 CAGTCGATAGCTGGAAGTACAATGTTGCAGTTTGCAAAAAC 1768 Score = 132 bits (71), Expect = 3e-30 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 255 ATGCTCGATGATTTCGTTGATGTGACCAAGGATGAGAAGCAGATGATGCACATGTGGAAC 314 |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 1938 ATGCTCGATGATTTCGTTGATGTGACTAAAGATGAGAAACAGATGATGCACATGTGGAAC 1997 Query 315 TCGTTTGTGAGGAAGCAGCG 334 |||||||||||||||||||| Sbjct 1998 TCGTTTGTGAGGAAGCAGCG 2017 Score = 54.7 bits (29), Expect = 6e-07 Identities = 33/35 (94%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 334 GGTGCTGGAGAGTGTTTATGGTGAAACTATGAAAC 368 |||||||||||||||||||||||||||| || ||| Sbjct 2107 GGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAAC 2141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18146657389 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5