BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922881
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43800.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1871 0.0
> AT1G43800.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr1:16577610-16579722 FORWARD
LENGTH=1401
Length=1401
Score = 1871 bits (1013), Expect = 0.0
Identities = 1154/1222 (94%), Gaps = 9/1222 (1%)
Strand=Plus/Plus
Query 1 TCTTCTCT-CTTCCACCATCCAAAATGCTTACGCACAAGTCTC-TCTTCTCCCACACCAC 58
|||||||| ||| |||||| ||||||||| |||||||||||| || ||||| |||||
Sbjct 30 TCTTCTCTACTT-CACCATAAAAAATGCTTGCGCACAAGTCTCTTC-TCTCCTTTACCAC 87
Query 59 CCAATGGCCTACACTAACGTCATCTCCGTCTACCTTTCTCGCCTCTCGCCCCCATCGACC 118
||||||| ||||||||| | ||||||||||||| ||||||||||||||||||| | ||||
Sbjct 88 CCAATGGGCTACACTAATGCCATCTCCGTCTACTTTTCTCGCCTCTCGCCCCCGTGGACC 147
Query 119 GGCCAAGATCTCGGCCGTGGCAGCACCAGTGAGGCCGGCTCTAAAACACCAAAACAAAAT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GGCCAAGATCTCGGCCGTGGCAGCACCAGTGAGGCCGGCTCTAAAACACCAAAACAAAAT 207
Query 179 CCACACCATGCCACCGGAGAAAATGGAGATTTTCAAATCTTTAGATGGATGGGCCAAGGA 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 208 CCACACCATGCCACCGGAGAAAATGGAGATATTCAAATCTTTAGATGGATGGGCCAAGGA 267
Query 239 TCAAATCTTGCCTCTTCTCAAACCGGTTGACCAATGTTGGCAACCCGCTTCTTTCTTACC 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 268 TCAAATCTTGCCTCTTCTCAAACCCGTTGACCAATGTTGGCAACCCGCTTCTTTCTTACC 327
Query 299 CGACCCGGCCTTACCCTTCTCCGAGTTCACCGACCAGGTGCGTGAGCTGAGGGAAAGAAC 358
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 328 CGACCCGGCCTTACCCTTCTCCGAGTTTACCGACCAGGTTCGTGAGCTGAGGGAAAGAAC 387
Query 359 GGCCTCATTGCCGGACGAATACTTCGTGGTGTTGGTTGGAGATATGATAACGGAGGACGC 418
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GGCCTCGCTGCCAGACGAATACTTCGTGGTGTTGGTTGGAGATATGATAACGGAGGACGC 447
Query 419 GTTGCCTACTTACCAGACGATGATCAACACGCTCGACGGCGTAAGGGACGAGACTGGCGC 478
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 448 GTTGCCTACTTACCAGACGATGATCAACACCCTTGATGGCGTAAGGGACGAGACTGGTGC 507
Query 479 GAGTGAGAGCGCTTGGGCCATGT-GGACACGCGCGTGGACGGCTGAGGAGAACCGTCATG 537
|||||||||||| ||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 508 GAGTGAGAGCGCGTGGGCAA-GTTGGACACGAGCGTGGACGGCTGAGGAGAACCGTCATG 566
Query 538 GTGATTTGTTGCGGACTTACTTGTACTTATCTGGTCGGGTAGACATGCTTATGGTAGAAC 597
||||||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct 567 GTGATTTGTTGCGGACTTACTTGTACTTATCCGGTCGTGTTGATATGCTTATGGTTGAAC 626
Query 598 GCACCGTACAGTATCTCATCGGCTCGGGCATGGATCCAGGAACGGAGAACAATCCATACT 657
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 627 GCACCGTTCAGCATCTCATCGGCTCGGGCATGGATCCAGGAACTGAGAACAATCCATACT 686
Query 658 TAGGTTTCGTGTACACGTCATTCCAAGAGCGAGCCACCTTCGTGTCTCACGGCAACACCG 717
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 687 TAGGTTTCGTGTACACGTCATTCCAAGAGCGAGCCACATTTGTGTCTCACGGCAACACGG 746
Query 718 CACGGCTAGCCAAGTCTGCCGGAGATCCTGTCCTCGCTCGAATCTGCGGCACCATTGCAG 777
|| ||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 747 CAAGGCTAGCCAAGTCCGCAGGAGATCCTGTCCTCGCTCGCATCTGCGGAACCATTGCAG 806
Query 778 CCGATGAGAAGCGCCATGAAAACGCTTACGTACGCATCGTTGAAAAGCTCCTCGAGATCG 837
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 807 CTGACGAGAAGCGCCATGAAAACGCTTACGTACGCATCGTTGAGAAGCTCCTCGAGATCG 866
Query 838 ACCCTAACGGTGCAGTCTCAGCCGTCGCCGATATGATGCGGAAGAAGATTACAATGCCGG 897
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 867 ACCCTAACGGTGCAGTCTCAGCCGTGGCCGACATGATGCGGAAGAAGATCACAATGCCGG 926
Query 898 CTCATCTAATGACAGACGGTCAAGACCCGATGCTTTTCGAACATTTCTCCGCCGTGGCTC 957
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 927 CTCATCTAATGACAGACGGTCGAGACCCGATGCTATTCGAACATTTCTCCGCCGTGGCTC 986
Query 958 AACGGCTAGGAG-TTTACACGGCGGATGATTACGCTGACATCTTGGAGTTTTTGGTTGGA 1016
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AGCGGCTAG-AGGTTTACACGGCGGATGATTACGCTGACATCTTGGAGTTTTTGGTTGGA 1045
Query 1017 CGGTGGAGATTAGAGAAGCTAGAGGGATTGACGGGTGAGGGTCAACGTGCACAGGAGTTT 1076
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1046 CGGTGGAGATTGGAGAAGCTAGAAGGATTGACGGGTGAGGGCCAACGTGCACAGGAGTTT 1105
Query 1077 GTGTGTGGGCTAGCGCAGAGGATTAGACGCCTTCAAGAGCGAGCTGACGAGAGAGCTAAG 1136
||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1106 GTGTGTGGGTTAGCTCAGAGGATTAGACGCCTTCAAGAGCGTGCAGACGAGAGAGCTAAG 1165
Query 1137 AAGCTTAAGAAGCCCCATGAGGTTTGCTTTAGTTGGATCTTCGATAAGCAGATTAGTGTG 1196
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 AAGCTTAAGAAGACCCATGAGGTTTGCTTTAGTTGGATCTTCGATAAGCAGATTAGTGTG 1225
Query 1197 TAAACTCTTGAAAATAT-AAAC 1217
||||||||||||||||| ||||
Sbjct 1226 TAAACTCTTGAAAATATCAAAC 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5