BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922886
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1277 0.0
> AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G11911.1);
Has 216 Blast hits to 212 proteins in 76 species: Archae -
0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:16708068-16709713
REVERSE LENGTH=1108
Length=1108
Score = 1277 bits (691), Expect = 0.0
Identities = 780/823 (95%), Gaps = 6/823 (1%)
Strand=Plus/Plus
Query 4 TGTTGTTATGTTCCTCCATGGCCTGTTACATCGTTCCTTATTACCACAATCCTGTTTTGT 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 176 TGTTGTTATGTTCCTCCATGGCCTGTTACATCGTTCCTTATTACCACCATCCTGTTTTGT 235
Query 64 CTCGTCCCAATAGAGAAATCATCAGTCACCGT------CACCACCACCGTTTCTGCAACA 117
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 236 CTCATCCCAATAGAGAAATCTTCAGTCACCGTCACCACCACCACCACCGTTTCTGCAACA 295
Query 118 AGCTCTTGAAGACAAGAATTAGGGTTCCTCGAAGTTCCGCCATTAGTGACGGTGGTGTTT 177
| |||||||| | ||||||||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 296 ATCTCTTGAATAGAAGAATTAGTGTTCCTCGAAGCTCCGCTATTAGTGACGGTGGTGTCT 355
Query 178 CCTACAATACTCTAGTCTCCGAGGCGGTGAGGCTTTTGGTTCCACAAGCCAACTTTGATT 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 CCTACAATACTCTAGTCTCCGAGGCGGTGAGGCTTTTGGTTCCACAAGCAAACTTTGATT 415
Query 238 CCTCGAAGCTTAAAGTTGAGTTCTTAGGGGAGTTATTGGAGAACAAGAGTAGCGGCGGGA 297
| || ||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
Sbjct 416 CTTCAAAGCTTAAAGTTGAGTTCTTAGGAGAGTTATTGGAGAACAAGAGTAACGGAGGAA 475
Query 298 TTATTACGCCGCGGACTTATATTCTTTCGCATTGTGACTTCACTGCTAACTTAACCTTAA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 TTATTACGCCGCGGACTTATATTCTTTCGCATTGTGACTTCACTGCTAACTTAACGTTAA 535
Query 358 CAATCTCCAACGTTATCAATCTGGATCAACTAGAAGGCTGGTACAAGAAAGATGATGTGG 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAATCTCAAACGTTATCAATCTGGATCAACTAGAAGGCTGGTACAAGAAAGATGATGTGG 595
Query 418 TTGCTGAGTGGAAGAAGGTGAATGACGAGTTGCGTTTACATATTCATTGTTGCGTGAGTG 477
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 596 TTGCTGAGTGGAAGAAGGTGAATGATGAGCTGCGTTTACATATTCATTGTTGTGTGAGTG 655
Query 478 GTATGAGTTTATTGCAGGATGTGGCTGCAGAGCTTAGGTATCATATTTTCTCCAAGGAAC 537
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 656 GTATGAGTTTATTGCAGGATGTTGCTGCTGAGCTTAGGTATCATATTTTCTCCAAGGAAT 715
Query 538 TGCCTTTGGTACTAAAAGCTGTGGTCCATGGAGATTCAGTTATGTTTAGAGAGAACCCTG 597
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 716 TGCCTTTGGTACTTAAAGCTGTGGTGCATGGAGATTCAGTTATGTTTAGAGAGAATCCTG 775
Query 598 AGCTAATGGATGCTTATGTATGGGTTTATTTCCATTCAAGCACACCTAAATACAATCGGA 657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 776 AGCTAATGGATGCTTATGTATGGGTTTATTTCCATTCAAGCACACCTAAGTACAATCGGA 835
Query 658 TCGAGTGTTGGGGACCTCTCAACGATGCTGCAAAGGGAAAGCAGAAGGGAAATCATCAAG 717
||||||||||||||||||| || |||||||| |||||||||||| |||| ||||||||||
Sbjct 836 TCGAGTGTTGGGGACCTCTTAAGGATGCTGCGAAGGGAAAGCAGCAGGGCAATCATCAAG 895
Query 718 GCTTCTTGAGTTCAACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCC 777
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTTCTTGAGTTCGACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCT 955
Query 778 TCTTTACGTTTCTTCTGTGAGACAAAGTTGTACATTCTCCTGT 820
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TATTTACGTTTCTTCTGTGAGACAAAGTTGTACATTCTCCTGT 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5