BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922892

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43720.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  93.5    7e-19
  AT3G42870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  89.8    8e-18
  AT3G30520.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  84.2    4e-16


> AT1G43720.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G42870.1); 
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078 
FORWARD LENGTH=945
Length=945

 Score = 93.5 bits (50),  Expect = 7e-19
 Identities = 79/93 (85%), Gaps = 1/93 (1%)
 Strand=Plus/Plus

Query  95   GATCCAAGATGATTACGATGAATTTAAAAAGGCAGAAGAGATATTCATTGCGTTAGACCT  154
            ||| ||||||||||||||||||||||||||||| |||| |||||| || ||| || | ||
Sbjct  388  GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT  446

Query  155  TCCTAAACATACTAGATTTTACTAGACATGCAT  187
            |||||| || ||||||||| | | | |||||||
Sbjct  447  TCCTAAGCACACTAGATTTCATTGGGCATGCAT  479


> AT3G42870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279 
FORWARD LENGTH=939
Length=939

 Score = 89.8 bits (48),  Expect = 8e-18
 Identities = 76/90 (84%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  98   CCAAGATGATTACGATGAATTTAAAAAGGCAGAAGAGATATTCATTGCGTTAGACCTTCC  157
            |||||||||||||||||||||||||||||| |||| |||||| ||  |  |||| |||||
Sbjct  396  CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCC  455

Query  158  TAAACATACTAGATTTTACTAGACATGCAT  187
             || || ||||||||||| | | |||||||
Sbjct  456  CAAGCACACTAGATTTTATTGGGCATGCAT  485


> AT3G30520.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G42870.1); 
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; 
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173 
FORWARD LENGTH=1194
Length=1194

 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 75/90 (83%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  98   CCAAGATGATTACGATGAATTTAAAAAGGCAGAAGAGATATTCATTGCGTTAGACCTTCC  157
            |||||||||||||||||||||||||||||| |||| |||||| |  ||  |||| |||||
Sbjct  720  CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCC  779

Query  158  TAAACATACTAGATTTTACTAGACATGCAT  187
             || || ||||||||| | | | |||||||
Sbjct  780  CAAGCACACTAGATTTCATTGGGCATGCAT  809



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8853037776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5