BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922902
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44224.1 | Symbols: | ECA1 gametogenesis related family pro... 708 0.0
> AT1G44224.1 | Symbols: | ECA1 gametogenesis related family protein
| chr1:16820946-16821808 REVERSE LENGTH=863
Length=863
Score = 708 bits (383), Expect = 0.0
Identities = 627/740 (85%), Gaps = 35/740 (5%)
Strand=Plus/Plus
Query 8 TTTTTGCACTAATCATGAGGAGCTTCATTTTAACCTCAACACTCTTTGTAGCTCTGCTAT 67
||||||| ||||||||||| |||||||||||| | |||||||| || | |||||| |||
Sbjct 39 TTTTTGCTCTAATCATGAGTAGCTTCATTTTAGCAACAACACTCCTTATGGCTCTGATAT 98
Query 68 GCTTTGTCTCTCTCCCGATTTCAACCGTTGGTTTTCGAAAGATACCGTGGCCTAAGCCAT 127
|||| |||||||||||||||||||||||||| || | ||||| ||||||||||||||| |
Sbjct 99 GCTTCGTCTCTCTCCCGATTTCAACCGTTGGATTACAAAAGAAACCGTGGCCTAAGCCGT 158
Query 128 CAGAACTAGTGGCA---AG---CCACGGCAAAGTCTCTGGCCGCCTAAGAGACTCTAAGA 181
||||| |||||||| | ||||||||||| || | ||||||| ||||||| ||||
Sbjct 159 CAGAATTAGTGGCAGGCCGCCACCACGGCAAAGGCTATAGCCGCCTTGGAGACTCCAAGA 218
Query 182 TTGGTTCGGCTACCTCTTCCGTATCAGACTCTAACGCACCTCTATCACCCCCAAG-ATTG 240
|||||| || |||||||||| ||||||||||||| ||||||||||| ||||| | ||||
Sbjct 219 TTGGTTGGGGTACCTCTTCCCTATCAGACTCTAAAGCACCTCTATCGCCCCC-CGTATTG 277
Query 241 CTACCGGGATTTCCCAACATCCCGTGGCTTCCTAACATCCCGGGAATTCCCATCATCCC- 299
|||||||| ||||| | |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 278 CTACCGGGGTTTCCTAGCATCCCATGGCTTCCTAACATCCCAGGAATTCCCATCATCCCG 337
Query 300 AATCCCGGAAATACCAAACATTCCAAGGATTCCTAACATTCCGGAAATACCAAACA-TCC 358
| | | | || || || || || |||| | ||| || ||||||||||||| |||
Sbjct 338 AGT--C-----TTCCCAATATCCCGAGTCTTCCCACCATCCCTGAAATACCAAACATTCC 390
Query 359 CAGGGCTTCCTAACATTCCGGGCCTCCCTAACCTCCCAGGATTTCCTAACCTCCCTAG-A 417
| || |||||||||| ||||| || |||||| | || || | ||||||||||| || |
Sbjct 391 GA-GGATTCCTAACATCCCGGGGCTTCCTAACATTCCGGGCCTACCTAACCTCCCGAGCA 449
Query 418 ---CT----T-CCGGGACTTCCTCCTTTACCGCGGGTCCAA-TCGGAAGTTGTATCGAAA 468
|| | ||||||||||||||| ||||| |||| ||| || |||||||| ||||||
Sbjct 450 TTCCTAGAATCCCGGGACTTCCTCCTCTACCGTGGGT-CAAGTCAGAAGTTGTGTCGAAA 508
Query 469 TCGGCTAAAGTGGAGAAGTGCTTGACGAAAGATGGATCAAAGACCTCAGAGAAATGCTTT 528
||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 509 TCGGCTAAAGTGGAGAACTGCTTGACGAAAGATGGATCAAAGACCTCAAAGAAATCCTTT 568
Query 529 TCACAAATATTGTCTAGCTCGGCAAAGAAAGA-TA--TCGCA-T--TGGACAAGGAGTGC 582
||| ||||||||||||||| || ||||||||| || || || | ||||| |||| |||
Sbjct 569 TCAAAAATATTGTCTAGCTGGGAAAAGAAAGATTATTTCACATTAATGGACGAGGAATGC 628
Query 583 TGTGAGATTGTTGTGAATATGGACAAGAAATGCAATAGGCACGTTCACATGTTGTTCAAG 642
|| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 629 TGCGAGATCGTTGTGAATATGGACAAGAAGTGCAATAGCCACGTTCAAATGTTGTTCAAG 688
Query 643 AGCCCATTCATTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGTCTAA 702
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 689 AGCCCATTCTTTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGACTAA 748
Query 703 GCGAGTCCCTCCAATGGATA 722
||||||||||||||||||||
Sbjct 749 GCGAGTCCCTCCAATGGATA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5