BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922904
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44350.1 | Symbols: ILL6 | IAA-leucine resistant (ILR)-like ... 2359 0.0
> AT1G44350.1 | Symbols: ILL6 | IAA-leucine resistant (ILR)-like
gene 6 | chr1:16834210-16838286 REVERSE LENGTH=2019
Length=2019
Score = 2359 bits (1277), Expect = 0.0
Identities = 1384/1437 (96%), Gaps = 2/1437 (0%)
Strand=Plus/Plus
Query 1 ACAAACAAGAACACAAAAAGTTATGGACAATCTCCGGAAACTTAAtcttctctctgtctc 60
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 ACAGACAAGAACAC--AAAGTTATGGACAATCTCCGGAAACTTAATCTTCTCTCTGTCTC 123
Query 61 tctaaccataatctttgtctctctTACAATAGCCACCAACTTACCTTTCTTTGAAGTGAA 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 TCTAACCATAATCTTTGTCTCTCTTACCATAGCCACCAACTTACCTTTCTTTGAAGTGAA 183
Query 121 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 184 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAATC 243
Query 181 CTTGGGTCTACCGGCTCAGGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CTTGGGTCTACCGGCTCATGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 303
Query 241 CGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTGGCGTGGCTTAAACGCGTTAG 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 304 TGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTTGCGTGGCTTAAACGCGTTAG 363
Query 301 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACGAGTAGGCTTGT 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 364 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACTAGTAGGCTTAT 423
Query 361 TAGGTCGGAGCTAGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TAGGTCGGAGCTGGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 483
Query 421 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 543
Query 481 ACTACCTATTCAGGAAGCAGTTGAATGGGAACACAAAAGCAAAGTTGCAGGCAAAATGCA 540
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 544 ACTACCTATTCAGGAAGCAGTTGAATGGGAACATATAAGCAAAGTTGCAGGCAAAATGCA 603
Query 541 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 604 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGGC 663
Query 601 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTCTTATTCCAGCCGGCCGAAGAAGCTGG 660
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 664 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTGTTATTCCAACCGGCTGAAGAAGCTGG 723
Query 661 AAATGGTGCGAAGAATATGATTGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 720
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAATGGTGCAAAGAATATGATCGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 783
Query 721 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 843
Query 781 CGCCGGATGTGGAATTTTCCGGGCCGTTATCACTGCCGAAGATAGTGGTGGCGCTGCTAA 840
||| |||||||||||||||||||| ||||||||| | |||||||| ||||||| |||||
Sbjct 844 CGCGGGATGTGGAATTTTCCGGGCGGTTATCACTTCGGAAGATAGCCGTGGCGCCGCTAA 903
Query 841 TCTTCTTCTTGCAGCTTCTTCCGCTGTCATTAGCCTTCAAGGAATTGTATCCCGTGAAGC 900
||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 904 TCTCCTTCTTGCAGCTTCTTCCGCGGTCATTAGTCTTCAAGGCATTGTATCCCGTGAAGC 963
Query 901 TAGTCCTCTTGACTCTCAGGTTGTATCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 960
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 964 TAGTCCTCTTGACTCTCAGGTTGTGTCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 1023
Query 961 TGTGGCGCCGGAAACGGTGGTCCTCGGTGGTACATTCAGAGCTTTTTCTAATTCAAGCTT 1020
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1024 TGTGGCGCCGGACACGGTGGTCCTCGGTGGTACTTTCAGAGCTTTTTCTAACTCAAGCTT 1083
Query 1021 CTATTACCTCAAGAAGCGTATTCAAGAGGTACTCATGGATCAGGTAGGGGTTTTTGGTTG 1080
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1084 CTACTACCTCAAGAAACGTATTCAAGAGGTACTCATGGATCAGGTCGGGGTTTTCGGTTG 1143
Query 1081 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATCTACCCGCCAACTACGAACAA 1140
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1144 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATATACCCGCCAACTACGAACAA 1203
Query 1141 CGATGCAACATACAATCACTTGAAGAAAGTCACCGTAGATTTACTCGGAGATAGCCACTT 1200
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1204 TGATGCAACATACAATCACTTGAAGAAAGTCACCATAGATTTGCTCGGAGATAGCCATTT 1263
Query 1201 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAGATCATCCC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1264 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAAATCATCCC 1323
Query 1261 GGCCGCATTCTACTTCATTGGCATAAGAAATGAAGAACTTGGATCAGTCCACATTGGTCA 1320
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1324 AGCCGCTTTCTACTTCATTGGCATAAGAAATGAAGAACTCGGATCAGTCCACATTGCTCA 1383
Query 1321 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCCGTTCATGCCGC 1380
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1384 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCGGTTCATGCCGC 1443
Query 1381 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAACAAAGACAATCTTCCCG 1437
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1444 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAGTAAAAACAATCTCCCCG 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5