BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922906

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G44414.1 | Symbols:  | unknown protein; Has 29 Blast hits to...   460    3e-129


> AT1G44414.1 | Symbols:  | unknown protein; Has 29 Blast hits 
to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:16847781-16848086 FORWARD 
LENGTH=306
Length=306

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 288/307 (94%), Gaps = 2/307 (1%)
 Strand=Plus/Plus

Query  21   ATGTTCTTCTTCTTCGTCGGTGGAGTAGGACAACAAGTGAGACAAGTCCTAAAATCCGGC  80
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGTTCTTCTTCTTCGTCGGTGGATTAGGGCAACAAGTGAGACAAGTCCTAAAATCCGGC  60

Query  81   GCCGGAACTTGCATAAGATGCGGCTCTGAAGCCGATTTAGTCGATTACGACAAAGTCTTG  140
            |||||||| |||||||||||||| ||| |||||||||| ||||| |||||||||||| | 
Sbjct  61   GCCGGAACATGCATAAGATGCGGTTCTCAAGCCGATTTGGTCGAGTACGACAAAGTCATA  120

Query  141  AAGCTCTTCTTTGTTCCTGTCTGGAGATGGCCTGGAAAAAATCCTCTACTTCATTGTAGA  200
            ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  AAGCTCTTCTTCGTTCCTGTCTGGAGATGGCCTGGAAAAGATCCTCTACTTCATTGTAGA  180

Query  201  GACTGTGATCTGTTTTTCCCTCAGTCTCTGTCACCGCCACCAGTTTCTCTT-GCTACGTG  259
            |||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct  181  GACTGTGATCTGTTCTTCCCTCAGTCTCTGTCACCGCCTCCAGTTTCT-TTAGCTACGTG  239

Query  260  TCGGTTCTGTGATCGTGTCGTTGAGCCTGAGTTTCGTTTTTGCCCTTTTTGTGGTTCTTC  319
            ||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct  240  TCGATTCTGTGATCGTGTTGTTGAGCCTGAGTTCCGTTTTTGCCCTTTTTGTGGCTCTTC  299

Query  320  TCTGTGA  326
            |||||||
Sbjct  300  TCTGTGA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5