BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922908

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:...   171    7e-42


> AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:4983567-4987375 
FORWARD LENGTH=1793
Length=1793

 Score =  171 bits (92),  Expect = 7e-42
 Identities = 142/164 (87%), Gaps = 12/164 (7%)
 Strand=Plus/Plus

Query  284   AATCCAGAGAGGAAGAACGCCATTGAAGCTAACACGAGTGATTCCAGGTCAATCAAAGAC  343
             ||| ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||  
Sbjct  1477  AAT-CAGAGAGGAAGAA-GCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAG--  1532

Query  344   AATTACATTGGAGTATGAATCTAACTTAACCTTTGAGCAATCTGGTGTTGCCAATTCTCT  403
                 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | 
Sbjct  1533  ----ACATTGGAGTATGAATCTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTC-CA  1587

Query  404   TG-TCTTTGCTACATGGGAATGAAAAATCTTATCTTATCTATAA  446
             || ||| |||||| ||||||||||| |||  ||| |||||||||
Sbjct  1588  TGATCTCTGCTACGTGGGAATGAAATATC--ATCATATCTATAA  1629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5