BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922911
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44575.1 | Symbols: NPQ4, PSBS | Chlorophyll A-B binding fam... 1393 0.0
> AT1G44575.1 | Symbols: NPQ4, PSBS | Chlorophyll A-B binding family
protein | chr1:16871696-16873383 FORWARD LENGTH=1059
Length=1059
Score = 1393 bits (754), Expect = 0.0
Identities = 842/885 (95%), Gaps = 4/885 (0%)
Strand=Plus/Plus
Query 20 AATGGCTCAAACCATGCTGCTTACTTCCGGCGTCACCGCCGGCCAATTCTTGAGGAACAA 79
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 72 AATGGCTCAAACCATGCTGCTTACTTCAGGCGTCACCGCCGGCCATTTTTTGAGGAACAA 131
Query 80 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 191
Query 140 TCTACCATCTCGTAGACAATCATTCGTTCCTCTTGCTCTCTTCAAATCCAAAACCAAAGC 199
||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 192 ACTACCATCTAGGAGACAATCATTCGTTCCTCTCGCTCTCTTCAAACCCAAAACCAAAGC 251
Query 200 TGCTCCCAAAAAGGTTGAGAAGCCGAAGAAAAAGGTTGAGGATGGGATCTTTGGTACGTC 259
|||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 252 TGCTCCTAAAAAGGTTGAGAAGCCGAAGAGCAAGGTTGAGGATGGCATCTTTGGAACGTC 311
Query 260 AGGTGGGATAGGTTTCACGAAGGCGAATGAGCTATTCGTGGGCCGTGTCGCTATGATCGG 319
|||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||||
Sbjct 312 TGGTGGGATTGGTTTCACAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGG 371
Query 320 TTTCGCTGCATCGTTG-TTGGGTGAGGCGTTGACGGGAAAAGGAATATTAGCTCAGCTGA 378
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 372 TTTCGCTGCATCGTTGCTT-GGTGAGGCGTTGACGGGAAAAGGGATATTAGCTCAGCTGA 430
Query 379 ATCTGGAGACAGGGATACCAATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTAT 438
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 431 ATCTGGAGACAGGGATACCGATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTGT 490
Query 439 TCACTTTGTTGGGGGCCATTGGAGCTCTCGGAGACAGAGGACAATTCGTCGACGATCCTC 498
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 TCACTCTGTTGGGAGCCATTGGAGCTCTCGGAGACAGAGGAAAATTCGTCGACGATCCTC 550
Query 499 CCACCGGACTCGAAAAAGCCGTCATTCCTCCCGGGAAAAGTGTCCGATCTGCCCTCGGTC 558
||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 551 CCACCGGGCTCGAGAAAGCCGTCATTCCTCCCGGCAAAAACGTCCGATCTGCCCTCGGTC 610
Query 559 TCAAAGAACAAGGTCCATTGTTTGGGTTCACAAAGGCGAACGAGCTATTCGTAGGAAGAT 618
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 611 TCAAAGAACAAGGTCCATTGTTTGGGTTCACGAAGGCGAACGAGTTATTCGTAGGAAGAT 670
Query 619 TGGCACAGCTGGGAATAGCATTTTCACTGATCGGAGAGATTATAACCGGGAAAGGAGCAT 678
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 671 TGGCACAGTTGGGAATAGCATTTTCACTGATAGGAGAGATTATTACCGGGAAAGGAGCAT 730
Query 679 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTCGTCCTCT 738
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 731 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTTGTCCTCT 790
Query 739 TAAATGTTGCTTTCTTCTTCTTTGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 798
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 791 TAAACGTTGCTTTCTTCTTCTTCGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 850
Query 799 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAG--TGTGTGACCAT 856
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 851 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAGAGTGTGTGACCTT 910
Query 857 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 901
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5