BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922918
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44790.1 | Symbols: | ChaC-like family protein | chr1:16912... 1002 0.0
> AT1G44790.1 | Symbols: | ChaC-like family protein | chr1:16912154-16913664
REVERSE LENGTH=931
Length=931
Score = 1002 bits (542), Expect = 0.0
Identities = 613/645 (95%), Gaps = 13/645 (2%)
Strand=Plus/Plus
Query 1 CTTTCTCTACCTCACCGGTAAAAATGGCGATGTGGGTATTCGGATACGGATCTTTAATAT 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 CTTTCTCTACATCACCGGTAAAAATGGCGATGTGGGTATTCGGGTACGGATCTTTAATAT 119
Query 61 GGAAAACGGGTTTTCCTTTCGACGAAAGCCTCCCTGGTTTCATCAAAGACTATCGCCGTG 120
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 120 GGAAAACGGGTTTTCCTTTCGACGAAAGCCTCCCTGGTTTCATTAAAGGCTATCGCCGTG 179
Query 121 TCTTCCATCAAGGTAGTACTGATCATAGAGGAACTTTGGATTTTCCGGGAAGAACTGTGA 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 180 TCTTCCATCAAGGTAGTACTGATCATAGAGGAACTCCGGATTTTCCGGGAAGAACAGTGA 239
Query 181 CATTAGAAGCTGCTCATGGAGAAGTTTGTTGTGGAGTTGCTTATAAGATAACTAAAGAGG 240
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CATTAGAAGCTGCTCATGAAGAAGTTTGTTGTGGAGTTGCTTACAAGATAACTAAAGAGG 299
Query 241 AAGATAAAAGAGATGCTTTAATGCATTTGGAAGTGAGGGAGAAGCAATATGATCAGAAAG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGATAAAAGAGATGCTTTATTGCATTTGGAAGTGAGGGAGAAGCAATATGATCAGAAAG 359
Query 301 AGTATCTTGATTTCTTCACTGACTCTAATGCTTCGGAACCGGCTGTGACAGGAGTAATGG 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AGTATCTTGATTTCTTCACTGACTCTAATGCTTCGGAACCGGCTGTGGCAGGAGTAATGG 419
Query 361 TATACATAGCTTCACCTGACAAGAAGAGCAACAACAACTACTTAGGACCAGCTCCTCTTG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTACATAGCTTCACCTGACAAGAAGAGCAACAACAACTACTTAGGACCAGCTCCTCTTG 479
Query 421 AAGATATTGCCAAACAGATAGTTTTAGCGAAAGGACCTTCAGGGCCAAACAGAGACTATC 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 AAGATATTGCCAAACAGATAGTTAAAGCGAAAGGACCTTCAGGGCCAAACAGAGACTATC 539
Query 481 TCTTCAACCTCGAAGAGGCTCTCGCTCAACTCGGGTTTAAAGATAAACATGTCACAGATC 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTCAACCTCGAAGAGGCTCTTGCTCAACTCGGGTTTAAAGATAAACATGTCACAGATC 599
Query 541 TTGCAAACCAAGTTAGGCACATTCTTTCAGAGACCCCG--GAGTTTGACATTGATGCCAC 598
||||||||||||||||||||||||||||||| | || | ||||| ||||||||||||||
Sbjct 600 TTGCAAACCAAGTTAGGCACATTCTTTCAGA-ATCC-GAAGAGTTAGACATTGATGCCAC 657
Query 599 CGCC---A-----A-CAATGTCTAGATTCCCAGTTTCTTTTCGAT 634
|||| | | |||||||||||||| ||| |||||||||||
Sbjct 658 CGCCGCCACCGCCAACAATGTCTAGATTCACAGCTTCTTTTCGAT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5