BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922923

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associ...   529    1e-149


> AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associated 
domain | chr1:16939801-16942523 FORWARD LENGTH=1221
Length=1221

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 326/346 (94%), Gaps = 0/346 (0%)
 Strand=Plus/Plus

Query  122  AGGACAAGAAACATCGGTATTATATCGTTTCAGCCATGGTGGATACGAAAGTTGACATGA  181
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  260  AGGACAAGAAACATCGGTATTATATTGTTTCAGCGATGGTGGATACGAAAGTTGACATGA  319

Query  182  AAGTTTTATCTCAGAGACTTGGTCTGGGAAAAGGAGGAATTAGAATGGCTCCTGAAGAAG  241
            ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct  320  AAGTTTTATCTCAGAGACTTGGTCTTGGAAAAGGAGGGATTAGAATGGCTCCAGAAGAAG  379

Query  242  CACTTGGTGAGCTTTTGCAGGTGTCCCTTGGATGTGTTACACCGTTTGCAGTTGTAAATG  301
            |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct  380  CACTTGGTGAGCTTTTGCAGGTATCCCTCGGATGTGTTACCCCGTTTGCAGTTGTAAATG  439

Query  302  AATCAGCAAGAGATGTGGCGCTCTTGTTAGACCAAAAATTCAAGAACCAAACACGCTGCA  361
            ||||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||||
Sbjct  440  AATCAGCAAGAGACGTGTCTCTCTTGTTAGACCAAAAATTCAAGAACCAAACGCGTTGCA  499

Query  362  TCTTCCACCCATTGTCGAACAACGTCTCAGTCTCTCTTAACATGTTGGGTCTGGACAAGT  421
            |||||||||||||||| ||| | |||||||||||||| ||||  ||||||||||||||||
Sbjct  500  TCTTCCACCCATTGTCTAACGATGTCTCAGTCTCTCTGAACACATTGGGTCTGGACAAGT  559

Query  422  TTCTGAAGTCGATTGGGAGAGATCCCGTATATGTTGACCTTGAGGC  467
            ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  560  TTCTGAAGTCGATTGGGAGAGATCCCGTATACGTTGACCTTGAGGC  605


 Score =  196 bits (106),  Expect = 1e-49
 Identities = 121/128 (95%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  3    TGA-TTTTGATTGATTCGATTCAATGGGTTTCTCCAAAGATCAGTTGCTTGATCGACTTC  61
            ||| ||||||||  |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  86   TGATTTTTGATTTTTTCGATTCAATGGGTTTCACCAAAGATCAGTTGCTTGATCGACTTC  145

Query  62   AGGAACTTGAGATTGATTATTCCAAGTATGAACATCCGCCTGTTTTAACCGTCGAAGAAC  121
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  146  AGGAACTTGAGATTGATTATTCCAAGTATGAACATCCGCCTGTACTAACCGTCGAAGAAC  205

Query  122  AGGACAAG  129
            ||| ||||
Sbjct  206  AGGCCAAG  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5