BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922928
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27860.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 351 4e-96
AT1G35970.1 | Symbols: | transposable element gene | chr1:1339... 224 1e-57
> AT3G27860.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr3:10326128-10328086 FORWARD LENGTH=1959
Length=1959
Score = 351 bits (190), Expect = 4e-96
Identities = 282/325 (87%), Gaps = 12/325 (4%)
Strand=Plus/Plus
Query 25 GATGAGTGATTCTA-AAGCCTTTCTT-TGTGCCGTGGAAGAAGATGTGAGAGAGATCGGT 82
|||||||||||| | ||| |||||| | ||| |||||||| | |||||||||||| |||
Sbjct 396 GATGAGTGATTCGAGAAG-GTTTCTTCT-TGCTGTGGAAGATGCTGTGAGAGAGATTGGT 453
Query 83 GAACATGTTGAGCAA-TTTTTGGTTTGTGATGACGCGGCTTCGGTTAGTTCTATAGCTTT 141
|| ||||||||| || |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct 454 GAGCATGTTGAG-AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTT 512
Query 142 GAATTCGGGGATTCTGGAAGGTATTAG-TGTGCCTGATGTTAGAAGAGAGATTATATCGT 200
||||| ||||||| ||| ||| || | ||||||||||||||||||| ||||||||||||
Sbjct 513 GAATTTGGGGATTAAGGATGGTGTT-GTTGTGCCTGATGTTAGAAGAAAGATTATATCGT 571
Query 201 CTTTGGTTCTGGAAAATCATGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGATGG 260
|||||||||| ||||| | || ||||||||||||||||||||||||||||| | || ||
Sbjct 572 CTTTGGTTCTTGAAAACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGG 631
Query 261 TTAGTTTT-AGTGATTTGTTAGAGATTGAGTTTTTGAAGAGGAAAATATCTAG-GTTTTA 318
|||| ||| | ||||||||||||||||||| |||||| |||||| ||||| | ||||||
Sbjct 632 TTAGATTTGA-TGATTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCG-GCGTTTTA 689
Query 319 TCGGTGTAATGGAAGGTTTGATTTA 343
||||||||| |||||||||||||||
Sbjct 690 TCGGTGTAAAGGAAGGTTTGATTTA 714
Score = 276 bits (149), Expect = 3e-73
Identities = 357/449 (80%), Gaps = 47/449 (10%)
Strand=Plus/Plus
Query 350 TTGACAAAGTGTTCAGGGTTTGCTAGGAAAAAGAGGAAATTTGGCAATGAAGCTAATC-T 408
|||| |||||||||||| |||||||| ||||||||||||| ||| ||| ||| || |
Sbjct 784 TTGAGAAAGTGTTCAGGTTTTGCTAGCAAAAAGAGGAAATGTGGTGATGTAGC-AACCAC 842
Query 409 TGGTGATGTAGCAACCACTG-GTTTTACTACTTTTAGTAAAGTTTCGAAGATTGAAAATG 467
|||| | || | | | || | | | | ||| |||||||||||||||||| |
Sbjct 843 TGGT--TCTA-CTA-CTTTGAGGAAGAAAAGACTGAGTGAAGTTTCGAAGATTGAAACCG 898
Query 468 CTAAGGAAGAAATTAGTAATGGGAAGAGTTTGTCCTCGAGGAAGAGGAAA-AGCAAAAGG 526
|| || ||||||||||||| |||||||||||||| |||||||||| |||| |||||||||
Sbjct 899 CTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAGA-GAAAGAGCAAAAGG 957
Query 527 GGTTTGAATTATAATAATGATGATGGGATTGGGAAAAGAGAAGAGTCAAAGGACTCAAAC 586
|||||| || | ||| ||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 958 GGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAGTCGAACGACTCAAAC 1017
Query 587 CATTTAGAAGAGAGTGAGAAGAAAGATGATTCATGTATCGAAATTGGTGTTGATTTAGGA 646
||||||||||||||| | || | | || | | | | |||||||| |
Sbjct 1018 CATTTAGAAGAGAGT--G-AG--A-A-GA---A---A--G--A-------TGATTTAGCA 1053
Query 647 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTTATGTTTCTTCAAGTGTTAAAAGG 706
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 1054 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCTTCATGTGTTAAAAGG 1113
Query 707 AGCAATGGAAATGGCGAG--A------CAGT----TAAAAGAGAGAGGAAGAAAAGCAAG 754
| ||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1114 TGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAGAGGAAGAAAAGCAAG 1173
Query 755 TATCTTTCA--TGAATACATGACAGATTT 781
|||||||| ||||||||||||||||||
Sbjct 1174 TATCTTTCTCCTGAATACATGACAGATTT 1202
> AT1G35970.1 | Symbols: | transposable element gene | chr1:13397664-13403558
FORWARD LENGTH=5895
Length=5895
Score = 224 bits (121), Expect = 1e-57
Identities = 176/202 (87%), Gaps = 5/202 (2%)
Strand=Plus/Plus
Query 45 TTCTTTGTGCCGTGGAAGAAGATGTGAGAGAGATCGGTGAACATGTTGAGCAATTTTTGG 104
|||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 5696 TTCTTTGTGCTAAGGAAGAAGTTGGGAGAGAGATCGATGAACATGTTGAGCAATTTTTGG 5755
Query 105 TTTGTGATGACGCGGCT-TCGGTTAGTTCTATAGCTTTGAATTCGGGGATTCTGGAAGGT 163
|||||||||||||| || | |||||||| | ||||||||||| | |||| | |||||
Sbjct 5756 TTTGTGATGACGCGACTGT-GGTTAGTTATGTAGCTTTGAATCCAGGGAGTAAGGAAGAC 5814
Query 164 ATTAGT-GTGCCTGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTGGAAAATCATGG 222
|| || ||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 5815 GTT-GTTGTGAATGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTAGAAAATCCTGG 5873
Query 223 AGTTGTTCTTGAAGATGT-TAA 243
|||||||||||||||||| |||
Sbjct 5874 AGTTGTTCTTGAAGATGTCTAA 5895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5