BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922934
Length=2950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing p... 4782 0.0
> AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing
protein 40A | chr1:16975604-16982965 FORWARD LENGTH=3213
Length=3213
Score = 4782 bits (2589), Expect = 0.0
Identities = 2821/2932 (96%), Gaps = 20/2932 (1%)
Strand=Plus/Plus
Query 1 AAGCTTTATTTTGTGTGAAGATGGCGAATAATCCTCCGCAGTCTTCTGGTGCTCAGCAGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||
Sbjct 170 AAGCTTTATTTTGTGTGTAGATGGCGAATAATCCTCCGCAGTCTTCTGGTAC-C--CAGT 226
Query 61 TTCGGCCGATGGCT-CCTGGACAGCAGGGTCAGCATTTTGTTCCTTCAGCTTCACAACCT 119
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 227 TTCGGCCGATGG-TACCTGGACAGCAGGGTCAGCATTTTGTTCCTGCAGCTTCACAACCT 285
Query 120 TTTCACCCTTATGGACATGTACCTCCAAATGTTCAAAGTCAGCCTCCACAGTATTCTCAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TTTCACCCTTATGGACATGTACCTCCAAATGTTCAAAGTCAGCCTCCACAGTATTCTCAG 345
Query 180 CCGATACAGCAGCAGCAGCTCTTTCCTGTGAGACCAGGCCAGCCTGTGCATATTACATCA 239
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 346 CCGATACAGCAGCAGCAGCTCTTTCCAGTGAGACCAGGTCAGCCTGTGCATATTACATCA 405
Query 240 TCCTCACAGGCTGTATCAGTTCCGTATATTCAAACGAACAAGATTCTCACTTCTGGATCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCCTCACAGGCTGTATCAGTTCCGTATATTCAAACGAACAAGATTCTCACTTCTGGATCT 465
Query 300 ACTCAACCACAGCCAAATGCACCTCAAATGACGGGCTTTGCTGCATCTGGACCTCCATTT 359
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 466 ACTCAACCACAGCCAAATGCACCTCCAATGACGGGCTTTGCTACATCTGGACCTCCATTT 525
Query 360 TCTTCTCCATATACTTTTGTACCATCATCTTATCCTCAGCAACAACCAACATCCTTGGTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCTTCTCCATATACTTTTGTACCATCATCTTATCCTCAGCAACAACCAACATCCTTGGTC 585
Query 420 CAACCAAATTCTCAGATGCATGTAGCCGGCGTCCCTCCAGCAGCAAACACTTGGCCTGTT 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 586 CAACCAAATTCTCAGATGCATGTAGCTGGCGTCCCTCCAGCAGCAAACACTTGGCCTGTT 645
Query 480 CCTGTAAATCAAAGTACCTCACTTGTTTCTCCTGTGCAGCAGACTGGGCAACAAACACCA 539
||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 CCTGTTAATCAAAGCACATCACTTGTTTCCCCTGTGCAGCAGACTGGGCAACAAACACCG 705
Query 540 GTCGCAGTTTCCACAGACCCAGGAAACTTGACTCCGCAATCTGCATCTGACTGGCAGGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTCGCAGTTTCCACAGACCCAGGAAACTTGACTCCGCAATCTGCATCTGACTGGCAGGAG 765
Query 600 CATACATCTGTTGATGGGAGAAAGTATTATTATAACAAGCGGACGAAA-CAATCAAATTG 658
|||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 766 CATACATCTGCTGATGGGAGAAAGTATTATTATAACAAGCGGAC-AAAGCAATCAAATTG 824
Query 659 GGAAAAACCTCTTGAACTGATGACACCACTTGAGAGGGCTGATGCATCCACTGTATGGAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GGAAAAACCTCTTGAACTGATGACACCACTTGAGAGGGCTGATGCATCCACTGTATGGAA 884
Query 719 GGAATTTACAACACCTGAAGGAAAGAAATATTATTATAACAAGGTTACAAAGGAGTCTAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGAATTTACAACACCTGAAGGAAAGAAATATTATTATAACAAGGTTACAAAGGAGTCTAA 944
Query 779 GTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCCAACTAGCTAGTGAAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCCAACTAGCTAGTGAAAA 1004
Query 839 AACGTCCCTTTCAGAAGCTGGATCTACCCCTCTGTCCCACCATGCTGCATCCTCGTCTGA 898
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1005 AACGTCCCTTTCGGAAGCTGGATCTACCCCTCTATCCCACCATGCTGCATCCTCGTCTGA 1064
Query 899 TCTAGCCGTTAGCACTGTGACTTCTGTTGTTCCCAGCACATCTTCAGCACTTCCTGGACA 958
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1065 TCTAGCAGTTAGCACTGTGACTTCTGTTGTTCCCAGCACATCTTCAGCACTTACTGGACA 1124
Query 959 TTCTTCAAGCCCTATTCAAGCGGGTTTGGCTGTACCTGTCACTCGTCCTCCCTTTGTTGC 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1125 TTCTTCAAGCCCTATTCAAGCGGGTTTGGCTGTACCTGTCACCCGTCCTCCCTCTGTTGC 1184
Query 1019 TCCTGTCACTCCAACATCTGCTGCAACTAGTGATACTGAGGCTTCTGCAATAAAACCCGA 1078
|||||| ||||||||||||| ||||| |||||| ||||||||| || |||||||| |||
Sbjct 1185 TCCTGTTACTCCAACATCTGGTGCAATTAGTGACACTGAGGCTACTACAATAAAAGGCGA 1244
Query 1079 TAATTTACCTTCTCGGGGGGCAGATGATTCAAATGATGGAGCTACAGCACAAAACAATGA 1138
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TAATTTATCATCTCGGGGGGCAGATGATTCAAATGATGGAGCTACAGCACAAAACAATGA 1304
Query 1139 GGCTGAGAATAAGGAAATGTCTGTGAATGGAAAAGCCAATTTGTCACCTGCTGGTGACAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GGCTGAGAATAAGGAAATGTCTGTGAATGGAAAAGCCAATTTGTCACCTGCTGGTGACAA 1364
Query 1199 AGCAAATGTCGAGGAACCTATGGTATATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGCAAATGTCGAGGAACCTATGGTATATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAA 1424
Query 1259 GTCTCTTTTGGAATCTGTAAATGTTCATTCCGACTGGACATGGGAACAGACATTGAAAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTCTCTTTTGGAATCTGTAAATGTTCATTCCGACTGGACATGGGAACAGACATTGAAAGA 1484
Query 1319 GATTGTTCACGATAAAAGATATGGTGCTTTGAGGACACTCGGTGAGCGGAAACAAGCGTT 1378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1485 GATTGTTCACGATAAAAGATATGGTGCTTTGAGGACACTCGGCGAGCGGAAACAAGCGTT 1544
Query 1379 TAACGAGTATCTTGGTCAAAGGAAAAAAGTGGAAGCTGAGGAAAGACGAAGGAGGCAGAA 1438
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TAACGAGTATCTTGGCCAAAGGAAAAAAGTGGAAGCTGAGGAAAGACGAAGGAGGCAGAA 1604
Query 1439 GAAAGCTAGGGAAGAATTTGTCAAGATGCTAGAGGACTGTGAAGAACTTTCATCATCCAT 1498
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1605 GAAAGCTCGGGAAGAATTTGTCAAGATGCTAGAGGAGTGTGAAGAACTTTCATCATCCCT 1664
Query 1499 GAAATGGAGCAAAGCAATGGGTTTGTTTGAAAATGATGAGCGCTTTAAAGCTGTTGATCG 1558
||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 1665 GAAATGGAGCAAAGCAATGAGTTTGTTCGAAAATGATCAGCGTTTTAAAGCTGTTGACCG 1724
Query 1559 TCCTAGGGATCGTGAAGATCTTTTTGACAATTACATTGTGGAACTTGAGAGGAAGGAAAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 TCCTAGGGATCGTGAAGATCTTTTTGACAATTACATTGTGGAACTTGAGAGGAAGGAAAG 1784
Query 1619 AGAAAAGGCAGCGGAGGAACATCGGCAGCATATGGCAGAGTATCGGAAGTTTCTTGAAAC 1678
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1785 AGAAAAGGCAGCGGAGGAACATCGGCAGTATATGGCAGACTATCGGAAGTTTCTTGAAAC 1844
Query 1679 CTGTGACTATATCAAAGCTGGTACACAATGGCGCAAAATTCAAGAGCGACTGGAGGATGA 1738
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1845 CTGTGACTATATCAAAGCTGGTACACAATGGCGCAAAATTCAAGATAGACTGGAGGATGA 1904
Query 1739 CGAAAGATGCTCATGTCTCGAAAAGATAGATCGTCTGATTGGTTTTGAGGAATACATGCT 1798
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1905 TGACAGATGCTCATGTCTTGAAAAGATAGATCGTCTGATTGGTTTTGAGGAATACATTCT 1964
Query 1799 TGACTTagagaaggaagaggaggagcagaagagagtagagaaagaacatgtaaggcgggc 1858
|||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1965 TGACCTAGAGAAGGAAGAAGAAGAGCTGAAGAGAGTAGAGAAAGAACATGTAAGGCGGGC 2024
Query 1859 cgagagaaAAAACCGTGATGCACTTCGTACACTTTTGGAAGAACATGTTGCTGCTGGCAT 1918
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 2025 CGAGAGAAAAAACCGTGATGCATTTCGTACACTATTGGAAGAACATGTTGCTGCAGGCAT 2084
Query 1919 CCTTACAGCCAAGACGTACTGGTTGGATTATTGCGTTGAGTTAAAAGACTTGCCCCAATA 1978
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2085 CCTTACAGCCAAGACGTACTGGTTGGATTATTGCATTGAGTTAAAAGACTTGCCCCAATA 2144
Query 1979 CCAAGCTGTTGCATCTAATACATCTGGCTCAACTCCGAAAGACTTGTTTGAAGATATCAC 2038
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2145 CCAAGCTGTTGCATCTAATACATCTGGTTCAACTCCGAAAGACTTGTTTGAAGATGTCAC 2204
Query 2039 AGAAGAATTAGAGAAACAGTATCATGAGGAGAAGAGTTACGTAAAGGAAGCTATGAAGTC 2098
||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||||||
Sbjct 2205 AGAAGAATTAGAGAAGCAGTATCATGAGGATAAGAGCTATGTGAAGGATGCTATGAAGTC 2264
Query 2099 AAGGAAGATTTCCATGGTCTCCTCGTGGCTGTTTGAAGATTTTAAATCTGCTATTTCAGA 2158
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 AAGAAAGATTTCCATGGTCTCCTCGTGGCTGTTTGAAGATTTTAAATCTGCTATTTCAGA 2324
Query 2159 AGATCTCAGTTCTCAACCGATATCAGATATAAATTTAAAGCTTATATATGATGACTTGGT 2218
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2325 AGATCTCAGTACTCAACAGATATCAGACATAAATTTAAAGCTTATATATGATGACTTGGT 2384
Query 2219 TGGGAGAGCGAAGGAAAAAGAAGAAAAAGAGGCTAGAAAGCTTCAGCGTCTGGCTGAAGA 2278
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2385 TGGGAGAGTGAAGGAAAAAGAAGAAAAAGAGGCCAGAAAGCTTCAGCGTCTGGCTGAAGA 2444
Query 2279 ATTTACCAATCTGTTGCACACTTTCAAGGAAATAACCGCAGCTTCGAATTGGGAAGATAG 2338
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct 2445 ATTTACCAATCTGTTGCACACTTTCAAGGAAATCACCGTAGCTTCAAATTGGGAAGATAG 2504
Query 2339 CAAACAACTATTAGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGAAAGTGTTAGCCA 2398
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 CAAACAACTAGTAGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGAAAGTGTTAGCCA 2564
Query 2399 AGGGTTATTTGAGGAATACATAACGAGTTTACAAGAAAAGGCAAAGGAGAAGGAGCGTAA 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565 AGGGTTATTTGAGGAATACATAACGAGTTTACAAGAAAAGGCAAAGGAGAAGGAGCGTAA 2624
Query 2459 GCGTGATgaggaaaaggttagaaaagagaaggaaagggacgagaaagagaaacggaaaga 2518
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2625 GCGTGACGAGGAAAAGGTTAGAAAAGAGAAGGAAAGGGACGAGAAAGAGAAACGGAAAGA 2684
Query 2519 caaggataaggagagaagggaaaaggaaagagaacgtgaaaaagagaagggaaaagagag 2578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2685 CAAGGATAAGGAGAGAAGGGAAAAGGAAAGAGAACGTGAAAAAGAGAAGGGAAAAGAGAG 2744
Query 2579 gagtaaacgagaagaaTCAGATGGTGAGACTGCTATGGATGTGAGCGAAGGTCACAAAGA 2638
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2745 GAGTAAACGGGAAGAATCAGATGGTGAGACTGCTATGGATGTGAGCGAAGGTCATAAAGA 2804
Query 2639 CGAGAAAAGAAAGGGAAAAGATCGTGACAGAAAACATCGGAGACGGCATCACAA---TTC 2695
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2805 CGAGAAAAGAAAGGGAAAAGATCGTGACAGAAAACATCGAAGACGGCATCACAACAATTC 2864
Query 2696 TGATGAAGATGTCAGTTCTGATAGGGATGACAGAGATGAGTCGAAGAAGTCCTCTCGTAA 2755
|||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 2865 TGATGAAGATGTTAGTTCTGATAGGGATGACAGAGATGAGTCGAAGAAATCATCCCGTAA 2924
Query 2756 ACATGGTAATGATCGTAAAAAATCAAGAAAGCACGCAAACTCACCTGAATCAGACAGTGA 2815
||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||
Sbjct 2925 ACATGGTAATGATCGCAAAAAATCAAGAAAGCACGCAAACTCGCCTGAATCGGAGAGTGA 2984
Query 2816 AAACCGGCATAAAAGACAGAAGAAGGAGCAGCGGGAAAGTAGTCGTCGAAGTGGTCATGA 2875
||||||||||||||||||||| || || || | ||||||| ||||||||| ||||
Sbjct 2985 AAACCGGCATAAAAGACAGAAAAA--AG-AG----A--GTAGTCGCCGAAGTGGTAATGA 3035
Query 2876 CGAGCTAGAGGATGGAGAAGTTGGGGAG-GATGGTGAAATCCGACATTAATC 2926
|||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 3036 CGAGCTAGAGGATGGAGAAGTTGGGGAGTGATAGTGAAATTCGACATTAATC 3087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146637974389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5