BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922936

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63340.2 | Symbols:  | Protein phosphatase 2C family protein...   202    3e-51


> AT3G63340.2 | Symbols:  | Protein phosphatase 2C family protein 
| chr3:23391628-23398377 REVERSE LENGTH=3953
Length=3953

 Score =  202 bits (109),  Expect = 3e-51
 Identities = 111/112 (99%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  230   ATACGACATGTGGGGTGTTGGGGTTGTGATGTTAGAGATGATTTTAGGATCACCCAATGT  289
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3183  ATACGACATGTGGAGTGTTGGGGTTGTGATGTTAGAGATGATTTTAGGATCACCCAATGT  3242

Query  290   TTTTGAGATTAGTTCTGTTACACGTGCCCTTTTGGATCAACATATCAGAGGT  341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3243  TTTTGAGATTAGTTCTGTTACACGTGCCCTTTTGGATCAACATATCAGAGGT  3294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5