BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922937
Length=211
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43680.1 | Symbols: | unknown protein; Has 30201 Blast hits... 117 4e-26
> AT5G43680.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17544029-17545752
FORWARD LENGTH=1142
Length=1142
Score = 117 bits (63), Expect = 4e-26
Identities = 86/96 (90%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 19 CAATGGCTCAAGAATTTAGTGGCTC-T--TTGGCTTCAGTTAACCTGCACGCTCAAGCAA 75
||| ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 425 CAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTTAACCTGCACGCTCAAGCAA 484
Query 76 CATCATTTGCACGATTATCTGAGACGGAT-AATGGA 110
||||||||||||||||||||||||| | | ||||||
Sbjct 485 CATCATTTGCACGATTATCTGAGACAG-TCAATGGA 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9400069063
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5