BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922939
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44970.1 | Symbols: | Peroxidase superfamily protein | chr1... 1698 0.0
> AT1G44970.1 | Symbols: | Peroxidase superfamily protein | chr1:17002117-17003688
FORWARD LENGTH=1286
Length=1286
Score = 1698 bits (919), Expect = 0.0
Identities = 1021/1071 (95%), Gaps = 3/1071 (0%)
Strand=Plus/Plus
Query 6 ACTCTCAAGTTATGAAAATGGCTATCTCAAAGCTTATTCCTACTCTTGTGCTCTTTGCTT 65
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 104 ACTCCCAAGTAACAAAAATGGCTATCTCAAAGCTTATTCCTACTCTTGTGCTCTTTGTTT 163
Query 66 TGTTCTCTTTTGATGTTGGTGTTGCTCATCCAGGTCTAGGATTTGGATGGGGAAGTAATA 125
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TGTTCTCTTTTGATGTTAGTGTTGCTCATCCAGGTCTAGGATTTGGATGGGGAAGTAATA 223
Query 126 ATCCCATTGGAGGATCTTTTT-CTTCAAATCTTTACCCACAGTTTTACCAGTTCTCTTGC 184
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 224 GTCCCATTGGAGGATCTTTTTAC-TCAAATCTTTACCCACAATTTTACCAGTTCTCTTGT 282
Query 185 CCACAAGCTGATGAGATTGTCATGACGGTGCTCGAAAAAGCCATAGCTAAAGAACCAAGA 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 283 CCACAAGCTGATGAGATTGTTATGACGGTGCTCGAAAAAGCCATAGCTAAAGAACCAAGA 342
Query 245 ATGGCAGCATCTTTACTCAGGCTTCACTTCCACGACTGCTTCGTTCAGGGCTGTGATGCA 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 343 ATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGGGCTGTGATGCA 402
Query 305 TCAATCTTGTTGGATGATAGTGCTACAATAAGAAGTGAAAAGAATGCGGGACCAAACAAG 364
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 403 TCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAG 462
Query 365 AACTCTATTAGAGGGTTTCAAGTAATCGACGAGATCAAAGCCAAACTTGAGCAAGCTTGC 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AACTCCGTTAGAGGGTTTCAAGTAATCGACGAGATCAAAGCCAAACTTGAGCAAGCTTGT 522
Query 425 CCTCAAACTGTCTCCTGCGCCGACATTCTAGCTCTTGCTGCTCGTGGCTCAACTATACTG 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 523 CCTCAAACTGTCTCCTGCGCCGACATTCTAGCTCTAGCTGCTCGTGGCTCAACTATACTG 582
Query 485 AGCGGTGGACCATCATGGGAGCTTCCACTAGGGAGGAGAGACTCGAGGACAGCGAGCCTT 544
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 583 AGTGGTGGACCATCATGGGAGCTTCCACTAGGGAGGAGAGACTCGAGGACCGCTAGCCTT 642
Query 545 AATGGCGCAAACACGAACATTCCTGCACCTAACTCCACTATTCAGAATCTCTTAACCTTG 604
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 643 AATGGCGCAAACACGAACATTCCTGCACCTAACTCAACTATTCAAAATCTCTTAACCATG 702
Query 605 TTCCAACGCCAAGGTTTGAACGAAGAAGACCTTGTTTCCCTATCAGGGGGACATACGATT 664
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 703 TTCCAACGTAAAGGTTTGAACGAAGAAGACCTTGTTTCCCTATCAGGAGGACATACGATT 762
Query 665 GGAGTAGCGAGGTGCACAACGTTTAAACAAAGGCTATACAATCAAAACGGTAACAACCAA 724
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 763 GGAGTAGCGAGGTGCACAACGTTTAAACAAAGACTATACAATCAAAACGGTAATAACCAA 822
Query 725 CCAGACGAGACGCTAGAGAGGTCTTACTACTATGGTCTCAGGTCGATTTGTCCACCAACG 784
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 823 CCAGACGAGACGCTAGAGAGGTCTTACTACTATGGTCTCAGGTCAATTTGTCCACCAACA 882
Query 785 GGCGGTGACAACAACATTTCACCTCTAGACTTAGCCTCTCCTTCTCGATTCGACAACACA 844
|||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 883 GGCGGTGACAACAATATTTCACCTCTAGACTTAGCCTCTCCTGCAAGATTCGACAACACA 942
Query 845 TACTTCAAGCTCCTTCTATGGGGAAAAGGCTTATTGACTTCAGATGAAGTGCTTCTCACT 904
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 943 TACTTCAAGCTCCTTCTATGGGGCAAAGGCTTATTGACATCAGATGAAGTGCTTCTCACT 1002
Query 905 GGCAACGTAGGCAGGACTGGTGCACTAGTGAAAGCTTACGCAGAAGACGAGAGACTTTTC 964
||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1003 GGCAATGTAGGCAAGACTGGTGCATTAGTGAAAGCTTATGCCGAAGACGAGAGACTTTTC 1062
Query 965 TTCCACCAATTTGCGAAGTCGATGGTAAACATGGGGAACATTCAGCCTCTTACTGGTTTT 1024
||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1063 TTCCAACAATTCGCAAAGTCGATGGTTAACATGGGAAACATTCAGCCTCTTACTGGTTTT 1122
Query 1025 AATGGTGAGATCAGGAAGAGTTGTCATGTGATTAACTAAAAGAAACTGTGT 1075
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1123 AATGGTGAGATCAGGAAGAGTTGTCATGTGATTAACTAAA-GAAACTGTGT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5