BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922941
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1... 2058 0.0
AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATP... 1432 0.0
> AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1:17009141-17011886
FORWARD LENGTH=1558
Length=1558
Score = 2058 bits (1114), Expect = 0.0
Identities = 1198/1240 (97%), Gaps = 0/1240 (0%)
Strand=Plus/Plus
Query 1 AATTTTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGG 60
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 AATTCTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCTGCTAGACGCCGTACCGCGG 119
Query 61 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGAA 179
Query 121 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 239
Query 181 AGTCTCTTCAAAGTGTTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGC 240
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AGTCTCTTCAAAGCGTTGGCCAGATTATTGGAGAAGTACTACGTCCTCTTGATAACGAGC 299
Query 241 GATTGATTGTTAAGGCGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTG 300
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 300 GATTGATTGTTAAGGCAAGTAGTGGCCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTGG 359
Query 301 ACAAGGAAAAGCTGACTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAA 360
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 360 ACAAGGAAAAGCTTACTTCTGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATTA 419
Query 361 TGCGAGCCCTTCCTCGTGAAGTCGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCGAGCCCTTCCTCGTGAAGTTGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 479
Query 421 GTAACATTAGTTACTCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAAT 480
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 480 GCAACATTAGTTACTCAGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTTAGGGAAT 539
Query 481 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTTGGGATTAAACCTCCTA 599
Query 541 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTG 600
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 600 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTCTACTAGCTAGGGCTATTG 659
Query 601 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACA 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCTAGTGCAATCATAGACAAATACA 719
Query 661 TTGGAGAAAGTGCTAGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTT 720
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 720 TTGGAGAAAGTGCTAGGTTGATTCGAGAAATGTTTAACTATGCTCGTGAACATCAGCCTT 779
Query 721 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTA 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGACGCCGTTTTAGTGAAGGAACTA 839
Query 781 GTGCTGATCGTGAAATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTG 840
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 GTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTTAACCAGCTTGATGGGTTTG 899
Query 841 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 959
Query 901 CACTTCTCCGTCCTGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAAT 960
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 960 CACTTCTCCGTCCGGGTAGGTTAGATAGAAAGATCGAGATCCCGTTGCCAAATGAACAAT 1019
Query 961 CAAGAATGGAAATCCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACT 1020
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1020 CAAGAATGGAAATCCTCAAGATCCACGCATCTGGCATTGCCAAGCATGGAGAAATAGACT 1079
Query 1021 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1139
Query 1081 CTGAAGCTGGAATGTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCA 1140
|||||||||||||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1140 CTGAAGCTGGAATGTTCGCAATCAGAGCAGAGCGTGACTATGTAATACATGAAGACTTCA 1199
Query 1141 TGAAGGCGGTGAGAAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACG 1200
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 TGAAGGCTGTGAGAAAGCTGAGCGAGGCCAAGAAGCTTGAGTCGAGCTCTCACTATAACG 1259
Query 1201 CGGATTTCGGGAAAGAGTAAGAAAAGAACGAGCTCAGAGA 1240
||||||| |||||||||||||||||||| ||||||||||
Sbjct 1260 CGGATTTTGGGAAAGAGTAAGAAAAGAATAAGCTCAGAGA 1299
> AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPase
4A | chr5:17248290-17251134 REVERSE LENGTH=1593
Length=1593
Score = 1432 bits (775), Expect = 0.0
Identities = 1065/1209 (88%), Gaps = 4/1209 (0%)
Strand=Plus/Plus
Query 16 AAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGGCGGTGACTGATTACC 75
||| ||||| ||||| || || ||| |||||||||||| || || || | || ||||
Sbjct 116 AAACGATGACCGACGTCGATGAATCCGTTAGACGCCGTACAGCCGCCGTTTCCGAGTACC 175
Query 76 GGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCACAGCTAGGGAGAATT 135
|||| |||||||| || || ||||| |||||||||||||| || |||||||||||||| |
Sbjct 176 GGAAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGAGAACT 235
Query 136 TAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGAAGTCTCTTCAAAGTG 195
|||||| |||||| ||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 236 TAAGAGGAGCTAAAAAGGAATTCAACAAAACCGAGGATGATCTCAAGTCTCTTCAAAGTG 295
Query 196 TTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGCGATTGATTGTTAAGG 255
|||| ||||||||||||||||| || || || || |||||||| |||||||||| || |
Sbjct 296 TTGGGCAGATTATTGGAGAAGTGCTTCGACCCCTGGATAATGAAAGATTGATTGTGAAAG 355
Query 256 CGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTGACAAGGAAAAGCTGA 315
|||| |||||||| ||||||||||||||||| || ||||| || || ||||||||||| |
Sbjct 356 CGAGCAGTGGTCCACGTTATGTGGTGGGTTGCCGAAGCAAAGTGGATAAGGAAAAGCTAA 415
Query 316 CTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAATGCGAGCCCTTCCTC 375
| || |||||||||||||| || |||||||| || || ||||| |||||||||||||| |
Sbjct 416 CCTCCGGAACTCGAGTTGTTCTCGATATGACAACACTAACAATTATGCGAGCCCTTCCCC 475
Query 376 GTGAAGTCGATCCTGTTGTTTATAACATG-TTGCATGAAGATCCAGGTAACATTAGTTAC 434
| ||||| ||||||||||||||||||||| || |||||||| || || |||||||| |||
Sbjct 476 GAGAAGTTGATCCTGTTGTTTATAACATGCTT-CATGAAGACCCTGGCAACATTAGCTAC 534
Query 435 TCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAATCTATTGAGCTGCCT 494
|| ||||| || || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 535 TCCGCTGTCGGAGGGTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTCCCT 594
Query 495 CTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTAAGGGTGTCCTTCTG 554
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 595 CTCATGAATCCTGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTCCTTCTG 654
Query 555 TATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTGCCAGCAATATCGAC 614
||||||||||| ||||||||||||||| || |||| ||||| ||||||||||| |||||
Sbjct 655 TATGGACCTCCAGGTACTGGAAAAACTCTACTAGCCAGGGCTATTGCCAGCAACATCGAT 714
Query 615 GCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACATTGGAGAAAGTGCT 674
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 715 GCTAACTTCTTGAAGGTTGTATCCAGTGCAATCATAGACAAGTACATTGGAGAAAGTGCT 774
Query 675 AGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTTGTATCATTTTCATG 734
||| |||| || || ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct 775 AGGCTGATTCGGGAGATGTTTAACTATGCCCGTGAACATCAGCCTTGTATCATATTCATG 834
Query 735 GATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTAGTGCTGATCGTGAA 794
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 835 GATGAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAA 894
Query 795 ATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTGACCAACTT-GGAAA 853
|| |||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 895 ATTCAAAGAACGCTTATGGAGTTACTCAACCAGCTTGATGGGTTTGAC-AACCTCGGAAA 953
Query 854 GGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAGCACTTCTCCGTCC 913
||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||
Sbjct 954 GGTGAAAATGATAATGGCCACAAACAGGCCTGATGTGCTTGATCCTGCGCTTCTCCGTCC 1013
Query 914 TGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAATCAAGAATGGAAAT 973
|| |||||||||||||||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 1014 GGGAAGGTTAGATAGAAAGATTGAGATCCCTTTGCCAAACGAGCAGTCAAGAATGGATAT 1073
Query 974 CCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACTATGAGGCTATCGT 1033
|| |||||||| || ||||||| ||||| ||||| ||||| || || |||||||| ||
Sbjct 1074 TCTTAAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATCGATTACGAGGCTATTGT 1133
Query 1034 GAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCACTGAAGCTGGAAT 1093
||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1134 CAAACTTGCAGAGGGATTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAAT 1193
Query 1094 GTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCATGAAGGCGGTGAG 1153
|||||| || |||| ||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 1194 GTTTGCAATCCGAGCAGAGCGGGATTATGTGATCCATGAAGATTTCATGAAGGCGGTGAG 1253
Query 1154 AAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACGCGGATTTCGGGAA 1213
||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || ||
Sbjct 1254 AAAGCTGAGTGAGGCCAAGAAACTGGAGTCCAGTTCGCACTATAACGCTGATTTTGGAAA 1313
Query 1214 AGAGTAAGA 1222
||||| |||
Sbjct 1314 AGAGTGAGA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5