BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922958
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1003 0.0
> AT1G45170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G42960.1);
Has 62 Blast hits to 62 proteins in 18 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17095980-17098006
REVERSE LENGTH=991
Length=991
Score = 1003 bits (543), Expect = 0.0
Identities = 623/663 (94%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 27 GATGAAAGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTGGCGTTGCTTCGCT 86
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 99 GATGAAGGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTAGCGTTGCTTCGCT 158
Query 87 TTCCTTCAACGCCGGCAATGCCAAGCTACGCGCCACCATGACTGATACTTCCCTCGTCGC 146
| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct 159 TACCTTCAACGCCGGCAATGCTAAGCTACGAGCCACCATGACTGATGCTTCCTTCGTCGC 218
Query 147 CGGTCCTAGCTTGAACGGCCTCTCTCTCGCCGTCGAGAAGCCTGGCTTCTTCATCATTGA 206
|||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 219 CGGTCCTAGCTTTAATGGTCTCTCTCTCGCCGTTGAGAAGCCTGGCTTCTTCATCATCGA 278
Query 207 CTACAACGTCCCTAAAAAGGATGTGAGGTTTCAGTTCATGAACACTGTTAGAATTGCAGA 266
|||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||
Sbjct 279 CTACAACGTCCCTAAAAAGGATGTTAGGTTTCAGTTTATGAACACTATCAGAATTGCAGA 338
Query 267 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACAATTGTTGACGG 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 339 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACGATTGTTGACGG 398
Query 327 GAGTCTTGTGATTGATCCGGCTAACAAGTTGTCTGCTAATTACATGGTGGGCACTAAGAA 386
|||| ||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 399 GAGTTTTGTGATTGATCCAGCAAACAAGTTGTCTGCTAATTACATGGTGGGTACAAAGAA 458
Query 387 CTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCATGTTATGA 446
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 459 TTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCTTGTTATGA 518
Query 447 CTTGTCTAAGAATGTGTGGGACTTTGCGGTTTCTCGGAAACTTTATGGTGGTGATAATCT 506
| || |||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 519 CGTGGCTAAGAATATGTGGGACTTTGCGATTTCTCATAAACTTTATGGTGGTGATAATCT 578
Query 507 CAAGGCCACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAGGAATTCTCA 566
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 579 CAAGGCAACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAACAACTCTAA 638
Query 567 ATCGACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCCGAGGAATTGAAGCCACC 626
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 639 ATCAACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCTGAGGAATTGAAGCCGCC 698
Query 627 AAAACTGACCGCAGAAACTACATGGAACCTGGAAATTTAGCTCCCAAGAAGTCTCAATTC 686
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 699 AAAACTGACCGCAGAAACTACATGGAACCTGGAACTTTAGCTCCCAAAAAGTCTCAATTC 758
Query 687 TTT 689
|||
Sbjct 759 TTT 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5